D. rerio Gene: sptlc2a - ENSDARG00000018976 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018976
Namesptlc2a
Descriptionserine palmitoyltransferase, long chain base subunit 2a [Source:ZFIN;Acc:ZDB-GENE-050522-23]
OrganismDanio rerio (zebrafish)
Synonym(s)sptlc2, zgc:110661
Orthologs(s)26 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.38e3
  • 1.38e3
95.38
  • 95.38
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.38e3
  • 3.38e3
88.69
  • 88.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.76e3
  • 3.76e3
87.41
  • 87.41
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
3.76e3
  • 3.76e3
  • 1.50e4
87.41
  • 87.41
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.92e3
  • 3.92e3
86.87
  • 86.87
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.98e3
  • 3.98e3
  • 7.54e3
86.68
  • 86.68
  • 74.77
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.07e3
  • 4.07e3
86.38
  • 86.38
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
4.07e3
  • 4.07e3
  • 5.13e3
  • 6.76e3
  • 6.95e3
  • 7.97e3
86.36
  • 86.36
  • 82.81
  • 77.36
  • 76.73
  • 73.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
85.50
  • 85.50
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.61e3
  • 4.61e3
84.57
  • 84.57
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
5.00e3
  • 5.00e3
83.27
  • 83.27
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.03e3
  • 5.03e3
83.17
  • 83.17
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.19e3
  • 5.19e3
82.61
  • 82.61
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
  • 1.06e4
  • 1.07e4
  • 1.12e4
  • 1.12e4
  • 1.13e4
  • 1.15e4
  • 1.19e4
  • 1.20e4
  • 1.23e4
  • 1.23e4
  • 1.27e4
  • 1.28e4
  • 1.28e4
  • 1.41e4
  • 1.49e4
82.42
  • 82.42
  • 64.43
  • 64.10
  • 62.62
  • 62.59
  • 62.31
  • 61.46
  • 60.09
  • 59.77
  • 58.75
  • 58.67
  • 57.55
  • 57.19
  • 57.11
  • 52.63
  • 50.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.33e3
  • 5.33e3
  • 6.17e3
82.14
  • 82.14
  • 79.35
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.31e3
  • 6.31e3
78.88
  • 78.88
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.38e3
  • 6.38e3
78.65
  • 78.65
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
6.69e3
  • 6.69e3
  • 7.38e3
  • 7.43e3
  • 7.78e3
  • 8.34e3
  • 1.02e4
  • 1.15e4
  • 1.18e4
  • 1.20e4
  • 1.22e4
77.61
  • 77.61
  • 75.27
  • 75.12
  • 73.95
  • 72.09
  • 65.94
  • 61.38
  • 60.60
  • 59.85
  • 59.10
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.72e3
  • 6.72e3
77.52
  • 77.52
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.38e3
  • 7.38e3
75.28
  • 75.28
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.84e3
  • 7.84e3
73.74
  • 73.74
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.18e3
  • 8.18e3
  • 8.33e3
  • 8.76e3
  • 9.66e3
72.60
  • 72.60
  • 72.11
  • 70.68
  • 67.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
8.52e3
  • 8.52e3
  • 9.49e3
  • 1.04e4
  • 1.24e4
  • 1.25e4
  • 1.33e4
71.47
  • 71.47
  • 68.23
  • 65.18
  • 58.39
  • 58.21
  • 55.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
8.67e3
  • 8.67e3
  • 8.70e3
  • 1.25e4
70.98
  • 70.98
  • 70.86
  • 58.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.01e3
  • 9.01e3
69.84
  • 69.84
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
9.76e3
  • 9.76e3
  • 1.16e4
67.31
  • 67.31
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.98
  • 65.98
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.60
  • 64.60
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.19e4
  • 1.19e4
60.26
  • 60.26
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.95
  • 57.95
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.39e4
  • 1.39e4
53.52
  • 53.52
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.01
  • 48.01
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000018976.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Chordata2 genesCompare expression
Eukaryota4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000018976.

Cross-references

EnsemblENSDARG00000018976 (sptlc2a)
ZFINZDB-GENE-050522-23 (sptlc2a)
EMBLCU855697
Uniprot/SPTREMBLF1QCX4, F1QCX4_DANRE, F8W491, F8W491_DANRE

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