D. rerio Gene: zgc:91890 - ENSDARG00000018980 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000018980
Namezgc:91890
Descriptionzgc:91890 [Source:ZFIN;Acc:ZDB-GENE-040704-21]
OrganismDanio rerio (zebrafish)
Synonym(s)rft2-b, rft2b, slc52a3b

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.41e3
  • 5.41e3
81.70358
  • 81.70358
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
78.31879
  • 78.31879
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.97e3
  • 7.97e3
73.06880
  • 73.06880
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.93e3
  • 8.93e3
  • 1.30e4
  • 1.34e4
69.82450
  • 69.82450
  • 56.22973
  • 54.73317
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
9.50e3
  • 9.50e3
67.88684
  • 67.88684
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.28681
  • 66.28681
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.02e4
  • 1.02e4
  • 1.34e4
65.45046
  • 65.45046
  • 54.63682
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.10e4
  • 1.10e4
  • 1.26e4
  • 1.45e4
  • 1.47e4
  • 1.54e4
62.86144
  • 62.86144
  • 57.32354
  • 51.10270
  • 50.38095
  • 47.95941
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.23278
  • 62.23278
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.32659
  • 61.32659
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000037Larval:Day 5
1.15e4
  • 1.15e4
61.10267
  • 61.10267
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
  • 1.49e4
59.06402
  • 59.06402
  • 49.80903
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
56.78096
  • 56.78096
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
55.83459
  • 55.83459
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.69893
  • 54.69893
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
53.97225
  • 53.97225
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
52.71154
  • 52.71154
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.55177
  • 50.55177
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
  • 1.52e4
49.91550
  • 49.91550
  • 48.57343
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBC074088
EnsemblENSDARG00000018980 (zgc:91890)
Uniprot/SWISSPROTQ6GMG6, S5A3B_DANRE
ZFINZDB-GENE-040704-21 (zgc:91890)

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