D. rerio Gene: fat1b - ENSDARG00000019063 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019063
Namefat1b
DescriptionFAT atypical cadherin 1b [Source:ZFIN;Acc:ZDB-GENE-130530-563]
OrganismDanio rerio (zebrafish)
Synonym(s)zmp:0000000560
Orthologs(s)6 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
3.77e3
  • 3.77e3
87.37
  • 87.37
AEIR
  • AEIR
UBERON:2000940posterior lateral line neuromast
  • ZFS:0000036Larval:Day 4
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
  • 2.30e4
52.96
  • 52.96
  • 22.88
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.43
  • 41.43
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
1.77e4
  • 1.77e4
  • 1.89e4
40.72
  • 40.72
  • 36.82
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.03e4
  • 2.03e4
32.02
  • 32.02
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.15e4
  • 2.15e4
  • 2.25e4
27.90
  • 27.90
  • 24.81
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSDARG00000019063.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata2 genesCompare expression
Chordata4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000019063.

Cross-references

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