D. rerio Gene: rab4a - ENSDARG00000019144 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019144
Namerab4a
DescriptionRAB4a, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-040525-1]
OrganismDanio rerio (zebrafish)
Synonym(s)fc93b03, wu:fc93b03
Orthologs(s)22 orthologs
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
6.15e3
  • 6.15e3
  • 1.25e4
79.41
  • 79.41
  • 58.06
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.02e3
  • 7.02e3
  • 1.10e4
  • 1.19e4
  • 1.25e4
76.48
  • 76.48
  • 63.19
  • 60.27
  • 58.19
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.63e3
  • 7.63e3
74.46
  • 74.46
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.85e3
  • 7.85e3
73.71
  • 73.71
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
72.81
  • 72.81
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.23e3
  • 8.23e3
72.46
  • 72.46
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
8.48e3
  • 8.48e3
  • 9.24e3
  • 9.42e3
  • 9.56e3
  • 1.04e4
  • 1.11e4
  • 1.28e4
  • 1.32e4
  • 1.35e4
  • 1.36e4
71.61
  • 71.61
  • 69.08
  • 68.47
  • 67.98
  • 65.21
  • 62.85
  • 57.30
  • 55.66
  • 54.67
  • 54.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
8.86e3
  • 8.86e3
70.33
  • 70.33
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
9.07e3
  • 9.07e3
69.63
  • 69.63
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.30e3
  • 9.30e3
68.87
  • 68.87
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
9.50e3
  • 9.50e3
  • 9.99e3
68.18
  • 68.18
  • 66.57
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
9.58e3
  • 9.58e3
  • 9.91e3
67.92
  • 67.92
  • 66.80
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
9.66e3
  • 9.66e3
67.64
  • 67.64
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.29
  • 67.29
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.22
  • 67.22
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.81e3
  • 9.81e3
67.15
  • 67.15
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.02e4
  • 1.02e4
  • 1.12e4
  • 1.17e4
  • 1.19e4
  • 1.25e4
  • 1.50e4
65.86
  • 65.86
  • 62.36
  • 60.93
  • 60.20
  • 58.07
  • 49.78
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.59
  • 63.59
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.09e4
  • 1.09e4
  • 1.24e4
  • 1.30e4
63.42
  • 63.42
  • 58.48
  • 56.42
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.59
  • 61.59
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.27
  • 61.27
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.16e4
  • 1.16e4
61.14
  • 61.14
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
1.40e4
  • 1.40e4
  • 1.43e4
  • 1.57e4
53.21
  • 53.21
  • 51.99
  • 47.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.40e4
  • 1.40e4
53.06
  • 53.06
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000068embryo stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000019Gastrula:Shield
1.44e4
  • 1.44e4
  • 1.47e4
  • 1.48e4
  • 1.48e4
  • 1.48e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.51e4
  • 1.51e4
  • 1.52e4
  • 1.61e4
  • 1.62e4
  • 1.67e4
51.86
  • 51.86
  • 50.70
  • 50.61
  • 50.60
  • 50.45
  • 50.25
  • 50.23
  • 50.19
  • 50.01
  • 49.42
  • 49.34
  • 48.94
  • 45.96
  • 45.86
  • 44.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.46e4
  • 1.46e4
50.98
  • 50.98
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.94
  • 50.94
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.50e4
  • 1.50e4
49.76
  • 49.76
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000019144.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Opisthokonta23 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000019144.

Cross-references

EnsemblENSDARG00000019144 (rab4a)
ZFINZDB-GENE-040525-1 (rab4a)
EMBLBC056535, BC163901, BC163906, CR762497
Uniprot/SPTREMBLB0V0U3, B0V0U3_DANRE
Uniprot/SWISSPROTQ6PHI9, RAB4A_DANRE

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