D. rerio Gene: ube2l3a - ENSDARG00000019188 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019188
Nameube2l3a
Descriptionubiquitin-conjugating enzyme E2L 3a [Source:ZFIN;Acc:ZDB-GENE-030131-2977]
OrganismDanio rerio (zebrafish)
Synonym(s)ube2l3, wu:fc22h11, zgc:86727
Orthologs(s)37 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
687
  • 687
  • 1.15e3
  • 1.25e3
  • 1.54e3
  • 1.71e3
  • 2.92e3
97.70
  • 97.70
  • 96.15
  • 95.83
  • 94.84
  • 94.29
  • 90.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
1.04e3
  • 1.04e3
  • 1.59e3
  • 1.70e3
  • 2.56e3
  • 2.60e3
96.51
  • 96.51
  • 94.67
  • 94.32
  • 91.44
  • 91.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.19e3
  • 1.19e3
96.01
  • 96.01
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.22e3
  • 1.22e3
  • 1.36e3
  • 1.42e3
  • 1.45e3
  • 1.64e3
  • 2.24e3
  • 2.45e3
  • 2.54e3
  • 2.80e3
  • 3.71e3
95.91
  • 95.91
  • 95.43
  • 95.26
  • 95.15
  • 94.50
  • 92.52
  • 91.81
  • 91.50
  • 90.62
  • 87.59
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.24e3
  • 1.24e3
95.86
  • 95.86
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
95.29
  • 95.29
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.41e3
  • 1.41e3
  • 1.48e3
  • 1.62e3
  • 1.63e3
  • 1.66e3
  • 2.25e3
  • 3.12e3
  • 3.18e3
  • 3.35e3
  • 3.67e3
  • 3.91e3
  • 3.94e3
  • 4.12e3
  • 5.05e3
  • 1.40e4
  • 1.41e4
  • 1.43e4
  • 1.50e4
95.28
  • 95.28
  • 95.05
  • 94.57
  • 94.53
  • 94.45
  • 92.48
  • 89.55
  • 89.36
  • 88.78
  • 87.72
  • 86.92
  • 86.80
  • 86.22
  • 83.11
  • 53.08
  • 52.63
  • 51.99
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.41e3
  • 1.41e3
95.27
  • 95.27
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.46e3
  • 1.46e3
95.13
  • 95.13
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.57e3
  • 1.57e3
94.75
  • 94.75
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
  • 2.82e3
94.72
  • 94.72
  • 90.57
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.60e3
  • 1.60e3
94.65
  • 94.65
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.62e3
  • 1.62e3
94.57
  • 94.57
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.53
  • 94.53
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.79e3
  • 1.79e3
94.00
  • 94.00
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.38
  • 93.38
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.27e3
  • 2.27e3
92.39
  • 92.39
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.33e3
  • 2.33e3
92.20
  • 92.20
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000104life cycle
2.35e3
  • 2.35e3
  • 3.05e3
  • 8.96e3
  • 1.49e4
92.14
  • 92.14
  • 89.78
  • 70.00
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
2.40e3
  • 2.40e3
  • 2.65e3
91.97
  • 91.97
  • 91.13
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
91.60
  • 91.60
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.61e3
  • 2.61e3
91.26
  • 91.26
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
2.75e3
  • 2.75e3
  • 9.96e3
90.81
  • 90.81
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.80e3
  • 2.80e3
90.63
  • 90.63
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.89e3
  • 2.89e3
  • 3.80e3
90.34
  • 90.34
  • 87.29
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
2.94e3
  • 2.94e3
  • 1.19e4
90.16
  • 90.16
  • 60.31
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.08e3
  • 3.08e3
89.69
  • 89.69
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.15e3
  • 3.15e3
89.46
  • 89.46
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.38e3
  • 3.38e3
  • 3.87e3
  • 4.76e3
88.68
  • 88.68
  • 87.04
  • 84.06
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.39e3
  • 3.39e3
  • 4.89e3
  • 5.24e3
  • 7.08e3
88.66
  • 88.66
  • 83.61
  • 82.45
  • 76.28
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.08
  • 88.08
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.71e3
  • 3.71e3
87.58
  • 87.58
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
82.54
  • 82.54
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • UBERON:00072322 cell stage
7.47e3
  • 7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species23 genesCompare expression
Bilateria23 species37 genesCompare expression

Orthology information comes from OMA : ENSDARG00000019188.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000019188.

Cross-references

EnsemblENSDARG00000019188 (ube2l3a)
ZFINZDB-GENE-030131-2977 (ube2l3a)
EMBLCU571089
Uniprot/SPTREMBLF1QRD9, F1QRD9_DANRE

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