D. rerio Gene: sema3aa - ENSDARG00000019235 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019235
Namesema3aa
Descriptionsema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa [Source:ZFIN;Acc:ZDB-GENE-991209-3]
OrganismDanio rerio (zebrafish)
Synonym(s)sem1a, sema1a, sema3a1, semaz1a

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
94.23724
  • 94.23724
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.18e3
  • 2.18e3
  • 3.97e3
92.65021
  • 92.65021
  • 86.56887
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.08e3
  • 3.08e3
  • 8.22e3
  • 8.59e3
89.58292
  • 89.58292
  • 72.20458
  • 70.97311
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
3.19e3
  • 3.19e3
  • 3.90e3
  • 3.91e3
  • 4.46e3
  • 4.80e3
  • 4.96e3
  • 6.28e3
  • 6.85e3
  • 7.36e3
  • 7.98e3
89.23068
  • 89.23068
  • 86.83521
  • 86.78451
  • 84.94526
  • 83.77338
  • 83.24332
  • 78.77133
  • 76.84819
  • 75.11304
  • 73.04145
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
3.43e3
  • 3.43e3
  • 1.33e4
  • 1.48e4
88.41429
  • 88.41429
  • 54.98815
  • 49.99324
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
3.85e3
  • 3.85e3
  • 4.29e3
  • 4.47e3
  • 5.04e3
  • 5.64e3
  • 5.86e3
  • 6.03e3
  • 7.55e3
  • 8.34e3
  • 9.13e3
  • 1.02e4
  • 1.11e4
  • 1.14e4
  • 1.26e4
86.97734
  • 86.97734
  • 85.51383
  • 84.88759
  • 82.98433
  • 80.93718
  • 80.19577
  • 79.62549
  • 74.49527
  • 71.79844
  • 69.13915
  • 65.56983
  • 62.63558
  • 61.53332
  • 57.53885
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
86.60014
  • 86.60014
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.79e3
  • 4.79e3
  • 4.98e3
  • 5.62e3
83.80420
  • 83.80420
  • 83.18696
  • 80.99802
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.06e3
  • 5.06e3
82.91106
  • 82.91106
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
5.52e3
  • 5.52e3
  • 7.18e3
  • 1.11e4
81.33285
  • 81.33285
  • 75.72880
  • 62.49830
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
80.93215
  • 80.93215
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.95e3
  • 5.95e3
79.87732
  • 79.87732
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.34e3
  • 6.34e3
  • 6.54e3
78.57765
  • 78.57765
  • 77.88762
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
6.66e3
  • 6.66e3
  • 1.33e4
77.48131
  • 77.48131
  • 54.97294
AEIR
  • AEIR
  • AEIR
UBERON:0002309medial longitudinal fasciculus
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
75.00167
  • 75.00167
AEIR
  • AEIR
UBERON:0009841upper rhombic lip
  • ZFS:0000026Segmentation:14-19 somites
7.40e3
  • 7.40e3
75.00167
  • 75.00167
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.65e3
  • 7.65e3
74.13787
  • 74.13787
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.02e3
  • 8.02e3
72.90656
  • 72.90656
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
8.63e3
  • 8.63e3
  • 8.88e3
70.82487
  • 70.82487
  • 69.98310
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
69.15147
  • 69.15147
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
9.82e3
  • 9.82e3
  • 1.04e4
  • 1.13e4
  • 1.28e4
  • 1.29e4
66.82382
  • 66.82382
  • 64.78069
  • 61.68516
  • 56.74936
  • 56.26036
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
63.96146
  • 63.96146
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
61.50947
  • 61.50947
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
60.76631
  • 60.76631
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.17e4
  • 1.17e4
60.40153
  • 60.40153
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.19e4
  • 1.19e4
  • 1.21e4
  • 1.30e4
59.68577
  • 59.68577
  • 59.25196
  • 56.09683
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.47768
  • 58.47768
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
58.32826
  • 58.32826
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
58.31136
  • 58.31136
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.06871
  • 58.06871
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.27e4
  • 1.27e4
  • 1.48e4
57.13609
  • 57.13609
  • 49.99493
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
1.27e4
  • 1.27e4
  • 1.33e4
  • 1.33e4
  • 1.41e4
57.10567
  • 57.10567
  • 54.97294
  • 54.97294
  • 52.47126
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.30e4
  • 1.30e4
  • 1.40e4
56.21790
  • 56.21790
  • 52.60453
AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
  • 1.48e4
  • 1.48e4
55.54540
  • 55.54540
  • 49.99662
  • 49.99493
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
1.32e4
  • 1.32e4
  • 1.32e4
  • 1.37e4
  • 1.40e4
55.53188
  • 55.53188
  • 55.23779
  • 53.82925
  • 52.75244
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
  • 1.39e4
  • 1.39e4
55.53188
  • 55.53188
  • 53.10304
  • 53.10304
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
1.32e4
  • 1.32e4
55.53188
  • 55.53188
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.32e4
  • 1.32e4
  • 1.34e4
  • 1.40e4
55.23779
  • 55.23779
  • 54.73317
  • 52.75244
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
  • 1.33e4
  • 1.40e4
  • 1.48e4
54.98815
  • 54.98815
  • 54.97294
  • 52.75244
  • 50.00000
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
54.97294
  • 54.97294
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.35e4
  • 1.35e4
54.53193
  • 54.53193
AEIR
  • AEIR
UBERON:2000164ventral mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
  • 1.48e4
53.55284
  • 53.55284
  • 49.98986
AEIR
  • AEIR
  • AEIR
UBERON:0001944pretectal region
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
  • 1.48e4
50.00169
  • 50.00169
  • 49.99155
AEIR
  • AEIR
  • AEIR
UBERON:0003900epaxial myotome region
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
  • 1.48e4
50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
ZFA:0005195MiD3cl (Danio)
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
ZFA:0005196MiD3cm (Danio)
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0011683adductor mandibulae
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
50.00000
  • 50.00000
AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:2007036hindbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
  • 1.48e4
49.99831
  • 49.99831
  • 49.99662
AEIR
  • AEIR
  • AEIR
UBERON:0003066pharyngeal arch 2
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
49.99493
  • 49.99493
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
49.98986
  • 49.98986
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
43.52188
  • 43.52188
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC162381, BX469931, BX897713
EnsemblENSDARG00000019235 (sema3aa)
Uniprot/SPTREMBLQ1LV94, Q1LV94_DANRE
ZFINZDB-GENE-991209-3 (sema3aa)

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