D. rerio Gene: sema3aa - ENSDARG00000019235 - Danio rerio (zebrafish)

Gene Information

Ensembl IDENSDARG00000019235
Namesema3aa
Descriptionsema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Aa [Source:ZFIN;Acc:ZDB-GENE-991209-3]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.71e3
  • 1.71e3
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.18e3
  • 2.18e3
  • 3.97e3
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.08e3
  • 3.08e3
  • 8.22e3
  • 8.59e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
3.19e3
  • 3.19e3
  • 3.90e3
  • 3.91e3
  • 4.46e3
  • 4.80e3
  • 4.96e3
  • 6.28e3
  • 6.85e3
  • 7.36e3
  • 7.98e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
3.43e3
  • 3.43e3
  • 1.33e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
3.85e3
  • 3.85e3
  • 4.29e3
  • 4.47e3
  • 5.04e3
  • 5.64e3
  • 5.86e3
  • 6.03e3
  • 7.55e3
  • 8.34e3
  • 9.13e3
  • 1.02e4
  • 1.11e4
  • 1.14e4
  • 1.26e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.97e3
  • 3.97e3
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.79e3
  • 4.79e3
  • 4.98e3
  • 5.62e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.06e3
  • 5.06e3
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
5.52e3
  • 5.52e3
  • 7.18e3
  • 1.11e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.64e3
  • 5.64e3
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.95e3
  • 5.95e3
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.34e3
  • 6.34e3
  • 6.54e3
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
6.66e3
  • 6.66e3
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:0002309medial longitudinal fasciculus
  • ZFS:0000029Pharyngula:Prim-5
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0009841upper rhombic lip
  • ZFS:0000026Segmentation:14-19 somites
7.40e3
  • 7.40e3
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.65e3
  • 7.65e3
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.02e3
  • 8.02e3
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000019Gastrula:Shield
8.63e3
  • 8.63e3
  • 8.88e3
AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.13e3
  • 9.13e3
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
9.82e3
  • 9.82e3
  • 1.04e4
  • 1.13e4
  • 1.28e4
  • 1.29e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.17e4
  • 1.17e4
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
1.19e4
  • 1.19e4
  • 1.21e4
  • 1.30e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
AEIR
  • AEIR
UBERON:2007032midbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.27e4
  • 1.27e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
1.27e4
  • 1.27e4
  • 1.33e4
  • 1.33e4
  • 1.41e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.30e4
  • 1.30e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
UBERON:2000633caudal tuberculum
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000035Larval:Protruding-mouth
1.32e4
  • 1.32e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
1.32e4
  • 1.32e4
  • 1.32e4
  • 1.37e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
  • 1.39e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
1.32e4
  • 1.32e4
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.32e4
  • 1.32e4
  • 1.34e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
  • 1.33e4
  • 1.40e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
1.33e4
  • 1.33e4
AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000035Larval:Protruding-mouth
1.35e4
  • 1.35e4
AEIR
  • AEIR
UBERON:2000164ventral mesenchyme
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.37e4
  • 1.37e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0001944pretectal region
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003900epaxial myotome region
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
ZFA:0005195MiD3cl (Danio)
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
ZFA:0005196MiD3cm (Danio)
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0011683adductor mandibulae
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000026Segmentation:14-19 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0008896post-hyoid pharyngeal arch
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007036hindbrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003066pharyngeal arch 2
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:2007034forebrain neural rod
  • ZFS:0000024Segmentation:5-9 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.67e4
  • 1.67e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data: