D. rerio Gene: plxna4 - ENSDARG00000019328 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019328
Nameplxna4
Descriptionplexin A4 [Source:ZFIN;Acc:ZDB-GENE-030131-4663]
OrganismDanio rerio (zebrafish)
Synonym(s)d204, wu:fd49b01, wu:fe15f03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
3.86e3
  • 3.86e3
  • 4.44e3
  • 5.18e3
  • 5.64e3
  • 7.40e3
  • 1.04e4
  • 1.04e4
  • 1.25e4
86.94976
  • 86.94976
  • 84.99322
  • 82.49154
  • 80.94225
  • 74.97970
  • 64.99153
  • 64.97970
  • 57.87109
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000026Segmentation:14-19 somites
3.97e3
  • 3.97e3
86.58104
  • 86.58104
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
4.35e3
  • 4.35e3
85.31335
  • 85.31335
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
4.63e3
  • 4.63e3
  • 5.22e3
  • 1.15e4
  • 1.18e4
  • 1.20e4
  • 1.20e4
  • 1.22e4
  • 1.22e4
84.36993
  • 84.36993
  • 82.34617
  • 61.09084
  • 59.99662
  • 59.35640
  • 59.35640
  • 58.80324
  • 58.80324
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001675trigeminal ganglion
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
4.93e3
  • 4.93e3
  • 5.92e3
  • 1.48e4
  • 1.48e4
  • 1.48e4
83.33165
  • 83.33165
  • 79.99662
  • 49.98986
  • 49.98648
  • 49.98479
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.04e3
  • 5.04e3
82.97361
  • 82.97361
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
5.37e3
  • 5.37e3
  • 5.82e3
  • 1.05e4
  • 1.24e4
  • 1.33e4
81.84246
  • 81.84246
  • 80.34786
  • 64.46014
  • 57.98760
  • 55.03317
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
  • 9.68e3
81.02485
  • 81.02485
  • 67.28914
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
6.34e3
  • 6.34e3
  • 7.40e3
  • 8.71e3
  • 1.29e4
  • 1.40e4
78.56975
  • 78.56975
  • 74.98815
  • 70.57472
  • 56.49131
  • 52.60453
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 7.89e3
  • 8.46e3
  • 9.86e3
74.99322
  • 74.99322
  • 74.98984
  • 73.32320
  • 73.32320
  • 71.41842
  • 66.66328
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
8.33e3
  • 8.33e3
  • 8.33e3
  • 8.88e3
  • 8.88e3
  • 9.42e3
71.86318
  • 71.86318
  • 71.86318
  • 69.98310
  • 69.98310
  • 68.16153
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003070trigeminal placode complex
  • ZFS:0000026Segmentation:14-19 somites
8.46e3
  • 8.46e3
71.41842
  • 71.41842
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
68.94868
  • 68.94868
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.09e4
  • 1.09e4
63.15948
  • 63.15948
AEIR
  • AEIR
CL:0000247Rohon-Beard neuron
  • ZFS:0000029Pharyngula:Prim-5
1.11e4
  • 1.11e4
62.49323
  • 62.49323
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
60.69907
  • 60.69907
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.20e4
  • 1.20e4
59.30941
  • 59.30941
AEIR
  • AEIR
UBERON:0010285midbrain basal plate
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.22e4
  • 1.22e4
  • 1.22e4
  • 1.22e4
58.80324
  • 58.80324
  • 58.80324
  • 58.80324
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.31545
  • 58.31545
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.10891
  • 58.10891
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000033Hatching:Long-pec
1.32e4
  • 1.32e4
55.53188
  • 55.53188
AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
54.97294
  • 54.97294
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.10407
  • 54.10407
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.24762
  • 53.24762
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.41e4
  • 1.41e4
52.27553
  • 52.27553
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.46e4
  • 1.46e4
50.76133
  • 50.76133
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
50.00760
  • 50.00760
AEIR
  • AEIR
UBERON:2007001dorso-rostral cluster
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
UBERON:2007002ventro-rostral cluster
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:2007003ventro-caudal cluster
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
50.00169
  • 50.00169
  • 50.00169
AEIR
  • AEIR
  • AEIR
CL:0000533primary motor neuron
  • ZFS:0000031Pharyngula:Prim-25
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
49.52766
  • 49.52766
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
46.95109
  • 46.95109
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
45.50893
  • 45.50893
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX537358, BX649446
EnsemblENSDARG00000019328 (plxna4)
Uniprot/SPTREMBLT1ECS6, T1ECS6_DANRE
ZFINZDB-GENE-030131-4663 (plxna4)

Do not show this banner again