D. rerio Gene: gpc1a - ENSDARG00000019341 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019341
Namegpc1a
Descriptionglypican 1a [Source:ZFIN;Acc:ZDB-GENE-051120-147]
OrganismDanio rerio (zebrafish)
Synonym(s)gpc1, si:rp71-69p9.1, zgc:122977

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.04e3
  • 2.04e3
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.04e3
  • 7.04e3
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
8.08e3
  • 8.08e3
  • 1.24e4
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
8.18e3
  • 8.18e3
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
8.68e3
  • 8.68e3
  • 1.00e4
  • 1.24e4
  • 1.49e4
  • 1.69e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001157posterior lateral line primordium
  • ZFS:0000029Pharyngula:Prim-5
9.86e3
  • 9.86e3
AEIR
  • AEIR
UBERON:0000160intestine
  • ZFS:0000035Larval:Protruding-mouth
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:0002107liver
  • ZFS:0000035Larval:Protruding-mouth
1.27e4
  • 1.27e4
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.27e4
  • 1.27e4
  • 1.34e4
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.30e4
  • 1.30e4
  • 1.32e4
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.30e4
  • 1.30e4
  • 1.35e4
AEIR
  • AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000029Pharyngula:Prim-5
1.32e4
  • 1.32e4
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000023Segmentation:1-4 somites
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.65e4
  • 1.65e4
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.78e4
  • 1.78e4
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.10e4
  • 2.10e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLBX322595
EnsemblENSDARG00000019341 (gpc1a)
Uniprot/SPTREMBLQ1LXM6, Q1LXM6_DANRE
ZFINZDB-GENE-051120-147 (gpc1a)

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