D. rerio Gene: tgfb3 - ENSDARG00000019367 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019367
Nametgfb3
Descriptiontransforming growth factor, beta 3 [Source:ZFIN;Acc:ZDB-GENE-030723-4]
OrganismDanio rerio (zebrafish)
Synonym(s)tgf beta 3, wu:fc78g09, zgc:92058
Orthologs(s)16 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
515
  • 515
  • 2.30e3
  • 2.78e3
  • 1.10e4
  • 1.20e4
98.28
  • 98.28
  • 92.31
  • 90.71
  • 63.14
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.22e3
  • 1.22e3
95.92
  • 95.92
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.50e3
  • 1.50e3
94.98
  • 94.98
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
2.70e3
  • 2.70e3
  • 2.97e3
  • 3.49e3
  • 4.35e3
  • 4.36e3
90.96
  • 90.96
  • 90.07
  • 88.33
  • 85.44
  • 85.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.91e3
  • 2.91e3
90.25
  • 90.25
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.03e3
  • 3.03e3
  • 3.07e3
89.86
  • 89.86
  • 89.74
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
3.10e3
  • 3.10e3
89.62
  • 89.62
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
3.15e3
  • 3.15e3
  • 5.66e3
  • 1.12e4
89.45
  • 89.45
  • 81.05
  • 62.50
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.25e3
  • 4.25e3
85.78
  • 85.78
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.62e3
  • 4.62e3
84.53
  • 84.53
AEIR
  • AEIR
UBERON:0005426lens vesicle
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
5.23e3
  • 5.23e3
  • 7.03e3
  • 7.47e3
82.49
  • 82.49
  • 76.46
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.25e3
  • 5.25e3
82.42
  • 82.42
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
6.45e3
  • 6.45e3
  • 9.96e3
  • 1.03e4
  • 1.47e4
  • 1.47e4
  • 1.50e4
78.40
  • 78.40
  • 66.65
  • 65.61
  • 50.90
  • 50.68
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000034Hatching:Pec-fin
6.54e3
  • 6.54e3
  • 9.96e3
  • 1.28e4
  • 1.49e4
78.12
  • 78.12
  • 66.65
  • 57.13
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
6.54e3
  • 6.54e3
  • 7.03e3
  • 7.17e3
  • 8.96e3
  • 9.19e3
  • 9.96e3
  • 1.22e4
78.12
  • 78.12
  • 76.46
  • 75.98
  • 69.98
  • 69.22
  • 66.66
  • 59.06
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.68e3
  • 6.68e3
77.64
  • 77.64
AEIR
  • AEIR
UBERON:0002342neural crest
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
  • 1.12e4
  • 1.12e4
  • 1.19e4
75.00
  • 75.00
  • 62.50
  • 62.49
  • 60.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.47e3
  • 7.47e3
  • 7.97e3
  • 9.96e3
  • 9.96e3
  • 1.07e4
  • 1.18e4
  • 1.20e4
75.00
  • 75.00
  • 73.32
  • 66.67
  • 66.67
  • 64.27
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000026Segmentation:14-19 somites
8.30e3
  • 8.30e3
72.21
  • 72.21
AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
8.40e3
  • 8.40e3
  • 1.39e4
71.86
  • 71.86
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.93e3
  • 8.93e3
70.10
  • 70.10
AEIR
  • AEIR
UBERON:0003069otic placode
  • ZFS:0000026Segmentation:14-19 somites
9.44e3
  • 9.44e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.60e3
  • 9.60e3
67.86
  • 67.86
AEIR
  • AEIR
UBERON:0001708jaw skeleton
  • ZFS:0000035Larval:Protruding-mouth
9.96e3
  • 9.96e3
66.67
  • 66.67
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
9.96e3
  • 9.96e3
  • 1.03e4
  • 1.08e4
66.65
  • 66.65
  • 65.37
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000035Larval:Protruding-mouth
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000029Pharyngula:Prim-5
1.09e4
  • 1.09e4
63.63
  • 63.63
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.15
  • 61.15
AEIR
  • AEIR
UBERON:0007287presumptive bulbus arteriosus
  • ZFS:0000029Pharyngula:Prim-5
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0008897fin
  • ZFS:0000035Larval:Protruding-mouth
1.19e4
  • 1.19e4
60.00
  • 60.00
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.18
  • 59.18
AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.23e4
  • 1.23e4
  • 1.28e4
  • 1.38e4
  • 1.42e4
  • 1.42e4
58.80
  • 58.80
  • 57.14
  • 53.83
  • 52.47
  • 52.35
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.25e4
  • 1.25e4
  • 1.27e4
58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
1.26e4
  • 1.26e4
  • 1.26e4
57.96
  • 57.96
  • 57.75
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.27
  • 57.27
AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000027Segmentation:20-25 somites
1.31e4
  • 1.31e4
56.24
  • 56.24
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.22
  • 56.22
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.34e4
  • 1.37e4
  • 1.39e4
56.22
  • 56.22
  • 54.97
  • 54.13
  • 53.41
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.26
  • 54.26
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0005498primitive heart tube
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
  • 1.39e4
53.83
  • 53.83
  • 53.31
AEIR
  • AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000029Pharyngula:Prim-5
1.39e4
  • 1.39e4
53.55
  • 53.55
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.39e4
  • 1.39e4
53.30
  • 53.30
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.52
  • 51.52
AEIR
  • AEIR
UBERON:0002165endocardium
  • ZFS:0000032Pharyngula:High-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0002397maxilla
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003112olfactory region
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004852cardiovascular system endothelium
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
ZFA:0005463oral ectoderm (Danio)
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006283future cardiac ventricle
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0005805dorsal aorta
  • ZFS:0000028Segmentation:26+ somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0011242ethmoid cartilage
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.57e4
  • 1.57e4
47.28
  • 47.28
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata2 genesCompare expression
Metazoa4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000019367.

Cross-references

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