D. rerio Gene: ssr4 - ENSDARG00000019444 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019444
Namessr4
Descriptionsignal sequence receptor, delta [Source:ZFIN;Acc:ZDB-GENE-030131-4900]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fe06a08, zgc:86940
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
304
  • 304
98.99
  • 98.99
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
346
  • 346
  • 388
  • 485
  • 497
  • 503
  • 522
  • 600
  • 924
  • 1.15e3
  • 1.28e3
98.84
  • 98.84
  • 98.70
  • 98.38
  • 98.34
  • 98.32
  • 98.26
  • 97.99
  • 96.91
  • 96.16
  • 95.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
366
  • 366
98.78
  • 98.78
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
437
  • 437
  • 9.34e3
98.54
  • 98.54
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
473
  • 473
  • 1.10e3
98.42
  • 98.42
  • 96.33
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
502
  • 502
98.32
  • 98.32
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
548
  • 548
98.17
  • 98.17
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
552
  • 552
  • 565
  • 882
  • 1.36e3
  • 1.38e3
  • 2.03e3
98.16
  • 98.16
  • 98.11
  • 97.05
  • 95.44
  • 95.38
  • 93.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
583
  • 583
98.05
  • 98.05
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
606
  • 606
97.97
  • 97.97
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
624
  • 624
97.91
  • 97.91
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
641
  • 641
97.86
  • 97.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
730
  • 730
97.56
  • 97.56
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
741
  • 741
  • 2.04e3
97.52
  • 97.52
  • 93.18
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
762
  • 762
97.45
  • 97.45
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
821
  • 821
  • 831
  • 920
  • 922
  • 925
  • 989
  • 1.03e3
  • 1.14e3
  • 1.18e3
  • 1.37e3
  • 1.37e3
  • 1.49e3
  • 1.68e3
  • 3.46e3
  • 6.22e3
97.26
  • 97.26
  • 97.22
  • 96.92
  • 96.92
  • 96.90
  • 96.69
  • 96.57
  • 96.19
  • 96.06
  • 95.43
  • 95.41
  • 95.00
  • 94.39
  • 88.43
  • 79.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
825
  • 825
  • 839
  • 1.00e3
  • 1.25e3
  • 1.92e3
97.24
  • 97.24
  • 97.19
  • 96.64
  • 95.81
  • 93.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
843
  • 843
  • 1.33e3
97.18
  • 97.18
  • 95.53
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
867
  • 867
  • 909
  • 1.09e3
97.10
  • 97.10
  • 96.96
  • 96.36
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
868
  • 868
97.10
  • 97.10
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
962
  • 962
96.78
  • 96.78
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
962
  • 962
96.78
  • 96.78
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
  • 1.48e3
96.29
  • 96.29
  • 95.05
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.20e3
  • 1.20e3
95.98
  • 95.98
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.26e3
  • 1.26e3
  • 2.19e3
  • 2.89e3
  • 5.83e3
95.78
  • 95.78
  • 92.67
  • 90.34
  • 80.48
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.38e3
  • 1.38e3
95.39
  • 95.39
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.48e3
  • 1.48e3
95.05
  • 95.05
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.98
  • 94.98
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.11e3
  • 2.11e3
92.92
  • 92.92
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
2.14e3
  • 2.14e3
92.83
  • 92.83
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.14e3
  • 2.14e3
92.83
  • 92.83
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
92.26
  • 92.26
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
5.98e3
  • 5.98e3
  • 6.22e3
  • 9.13e3
79.99
  • 79.99
  • 79.16
  • 69.43
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005305thyroid follicle
  • ZFS:0000037Larval:Day 5
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0001264pancreas
  • ZFS:0000037Larval:Day 5
8.30e3
  • 8.30e3
72.22
  • 72.22
AEIR
  • AEIR
UBERON:2000058polster
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
9.96e3
  • 9.96e3
  • 9.96e3
  • 1.05e4
66.65
  • 66.65
  • 66.65
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.02e4
  • 1.02e4
  • 1.05e4
65.77
  • 65.77
  • 64.98
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
  • 1.09e4
  • 1.09e4
  • 1.20e4
64.98
  • 64.98
  • 63.61
  • 63.61
  • 59.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0008895splanchnocranium
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.12e4
  • 1.12e4
  • 1.12e4
62.49
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
1.16e4
  • 1.16e4
  • 1.16e4
  • 1.16e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
61.09
  • 61.09
  • 61.09
  • 61.09
  • 58.80
  • 58.80
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002538hatching gland
  • ZFS:0000026Segmentation:14-19 somites
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000019444.

Cross-references

EnsemblENSDARG00000019444 (ssr4)
ZFINZDB-GENE-030131-4900 (ssr4)
EMBLCR354375
Uniprot/SPTREMBLE9QHX8, E9QHX8_DANRE, F1QXF8, F1QXF8_DANRE

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