D. rerio Gene: tmx1 - ENSDARG00000019487 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019487
Nametmx1
Descriptionthioredoxin-related transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2327]
OrganismDanio rerio (zebrafish)
Synonym(s)txndc, txndc1, wu:fc04g05

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.99e3
  • 2.99e3
89.89404
  • 89.89404
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.16e3
  • 3.16e3
89.31924
  • 89.31924
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.03e3
  • 4.03e3
86.38568
  • 86.38568
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.06e3
  • 4.06e3
  • 6.61e3
  • 7.19e3
86.27823
  • 86.27823
  • 77.65275
  • 75.69260
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.57e3
  • 4.57e3
84.55715
  • 84.55715
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.35e3
  • 5.35e3
81.93392
  • 81.93392
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.46e3
  • 5.46e3
81.53888
  • 81.53888
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
5.49e3
  • 5.49e3
81.43877
  • 81.43877
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.50e3
  • 5.50e3
81.40811
  • 81.40811
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
5.75e3
  • 5.75e3
  • 5.98e3
  • 7.68e3
  • 8.75e3
  • 8.89e3
  • 9.11e3
  • 9.17e3
  • 9.22e3
  • 9.25e3
  • 9.31e3
  • 9.41e3
  • 9.41e3
  • 9.55e3
  • 9.89e3
  • 1.45e4
  • 1.49e4
80.57552
  • 80.57552
  • 79.78069
  • 74.06141
  • 70.41812
  • 69.97156
  • 69.22662
  • 69.02050
  • 68.85299
  • 68.73667
  • 68.52102
  • 68.19861
  • 68.19762
  • 67.71778
  • 66.57694
  • 51.11845
  • 49.79382
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.81e3
  • 5.81e3
80.35232
  • 80.35232
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.10603
  • 80.10603
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.90e3
  • 5.90e3
80.07875
  • 80.07875
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
6.07e3
  • 6.07e3
  • 8.04e3
  • 1.03e4
79.48115
  • 79.48115
  • 72.84126
  • 65.19078
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
6.28e3
  • 6.28e3
  • 6.77e3
  • 7.82e3
  • 8.36e3
  • 8.75e3
  • 9.03e3
  • 9.13e3
  • 9.65e3
  • 1.08e4
  • 1.09e4
78.78566
  • 78.78566
  • 77.13146
  • 73.57018
  • 71.73576
  • 70.42719
  • 69.48740
  • 69.13119
  • 67.39515
  • 63.66008
  • 63.26402
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.35e3
  • 6.35e3
78.54427
  • 78.54427
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.43e3
  • 6.43e3
78.26374
  • 78.26374
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
6.45e3
  • 6.45e3
  • 6.90e3
78.19256
  • 78.19256
  • 76.67394
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.55e3
  • 6.55e3
  • 7.61e3
77.88180
  • 77.88180
  • 74.28503
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.69253
  • 77.69253
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.00e3
  • 7.00e3
76.35470
  • 76.35470
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
7.18e3
  • 7.18e3
  • 9.93e3
75.73708
  • 75.73708
  • 66.43019
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.61e3
  • 7.61e3
74.29785
  • 74.29785
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.93e3
  • 7.93e3
73.19219
  • 73.19219
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
8.27e3
  • 8.27e3
  • 9.69e3
  • 1.21e4
72.03606
  • 72.03606
  • 67.23553
  • 59.13559
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
8.49e3
  • 8.49e3
71.32395
  • 71.32395
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
8.65e3
  • 8.65e3
  • 9.07e3
  • 9.10e3
  • 1.03e4
  • 1.06e4
70.76204
  • 70.76204
  • 69.35907
  • 69.25780
  • 65.26139
  • 64.07574
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.33e4
  • 1.33e4
55.16372
  • 55.16372
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Cross-references

EMBLCU861445
EnsemblENSDARG00000019487 (tmx1)
Uniprot/SPTREMBLF1Q6B4, F1Q6B4_DANRE
ZFINZDB-GENE-030131-2327 (tmx1)

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