D. rerio Gene: mcm5 - ENSDARG00000019507 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019507
Namemcm5
Descriptionminichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
OrganismDanio rerio (zebrafish)
Synonym(s)mcm5 minichromosome maintenance deficient 5, wu:fb34a06

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
672
  • 672
  • 918
  • 940
  • 1.06e3
  • 1.46e3
  • 1.64e3
  • 2.17e3
  • 3.06e3
  • 3.65e3
  • 4.57e3
97.73207
  • 97.73207
  • 96.89998
  • 96.82626
  • 96.42817
  • 95.07806
  • 94.46575
  • 92.65841
  • 89.67762
  • 87.67682
  • 84.55485
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
881
  • 881
  • 1.48e4
97.02445
  • 97.02445
  • 49.88846
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
954
  • 954
  • 1.03e3
  • 1.12e3
  • 1.17e3
  • 1.25e3
  • 1.31e3
  • 1.38e3
  • 1.39e3
  • 2.68e3
  • 3.15e3
  • 3.33e3
  • 4.46e3
  • 6.21e3
  • 7.64e3
  • 1.34e4
  • 1.43e4
  • 1.46e4
96.77895
  • 96.77895
  • 96.53218
  • 96.20581
  • 96.04696
  • 95.78305
  • 95.58483
  • 95.33958
  • 95.29430
  • 90.92914
  • 89.35966
  • 88.74875
  • 84.94435
  • 79.01917
  • 74.18940
  • 54.82761
  • 51.81840
  • 50.68197
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.47675
  • 96.47675
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.08e3
  • 1.08e3
96.36473
  • 96.36473
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
1.10e3
  • 1.10e3
  • 1.43e3
  • 1.67e3
  • 2.03e3
  • 2.30e3
96.29662
  • 96.29662
  • 95.15357
  • 94.35790
  • 93.13244
  • 92.23805
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.10e3
  • 1.10e3
96.27780
  • 96.27780
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.23e3
  • 1.23e3
  • 1.97e3
  • 2.18e3
95.85787
  • 95.85787
  • 93.34947
  • 92.61869
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.24e3
  • 1.24e3
95.82533
  • 95.82533
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.30e3
  • 1.30e3
  • 3.60e3
  • 1.17e4
95.60250
  • 95.60250
  • 87.84911
  • 60.34887
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.94702
  • 94.94702
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.72e3
  • 1.72e3
  • 1.33e4
94.17406
  • 94.17406
  • 54.97294
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
93.26382
  • 93.26382
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.05e3
  • 2.05e3
93.08989
  • 93.08989
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
  • 1.61e4
91.56790
  • 91.56790
  • 45.73151
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.71e3
  • 2.71e3
90.84042
  • 90.84042
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.30e3
  • 3.30e3
88.83288
  • 88.83288
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.64685
  • 88.64685
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.38952
  • 87.38952
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.12927
  • 87.12927
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.15e3
  • 4.15e3
  • 6.58e3
85.99267
  • 85.99267
  • 77.76163
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000028Segmentation:26+ somites
4.57e3
  • 4.57e3
  • 1.39e4
  • 1.48e4
84.55431
  • 84.55431
  • 52.93800
  • 50.00169
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.59e3
  • 4.59e3
  • 5.07e3
  • 6.42e3
84.49239
  • 84.49239
  • 82.85941
  • 78.28821
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.93e3
  • 4.93e3
  • 4.93e3
  • 4.93e3
  • 4.93e3
  • 5.92e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 6.58e3
  • 9.25e3
  • 9.87e3
  • 1.04e4
  • 1.04e4
83.33165
  • 83.33165
  • 83.33165
  • 83.33165
  • 83.33165
  • 79.99662
  • 78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 78.56975
  • 77.77439
  • 77.77439
  • 68.74493
  • 66.65990
  • 64.99153
  • 64.99153
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.09e3
  • 5.09e3
82.81632
  • 82.81632
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.66211
  • 77.66211
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
8.46e3
  • 8.46e3
  • 1.18e4
  • 1.28e4
71.41842
  • 71.41842
  • 59.98310
  • 56.64807
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.00321
  • 70.00321
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.40113
  • 68.40113
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.86e3
  • 9.86e3
  • 1.48e4
66.66666
  • 66.66666
  • 49.98479
AEIR
  • AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000035Larval:Protruding-mouth
1.06e4
  • 1.06e4
64.28063
  • 64.28063
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
63.87304
  • 63.87304
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.53029
  • 62.53029
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.25e4
  • 1.25e4
  • 1.48e4
57.67708
  • 57.67708
  • 49.99662
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.27e4
  • 1.27e4
  • 1.32e4
57.13609
  • 57.13609
  • 55.53188
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
1.32e4
  • 1.32e4
55.53188
  • 55.53188
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
1.33e4
  • 1.33e4
  • 1.34e4
54.97294
  • 54.97294
  • 54.73317
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
1.33e4
  • 1.33e4
54.97294
  • 54.97294
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
1.35e4
  • 1.35e4
54.53193
  • 54.53193
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.15145
  • 54.15145
AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000035Larval:Protruding-mouth
1.48e4
  • 1.48e4
50.00169
  • 50.00169
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000025Segmentation:10-13 somites
1.48e4
  • 1.48e4
49.99831
  • 49.99831
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
49.99662
  • 49.99662
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
1.48e4
  • 1.48e4
49.97465
  • 49.97465
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLCR383684, FP101861
EnsemblENSDARG00000019507 (mcm5)
Uniprot/SPTREMBLF1QK71, F1QK71_DANRE
ZFINZDB-GENE-021209-1 (mcm5)

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