D. rerio Gene: mcm5 - ENSDARG00000019507 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019507
Namemcm5
Descriptionminichromosome maintenance complex component 5 [Source:ZFIN;Acc:ZDB-GENE-021209-1]
OrganismDanio rerio (zebrafish)
Synonym(s)mcm5 minichromosome maintenance deficient 5, wu:fb34a06
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
738
  • 738
  • 1.45e3
  • 1.68e3
  • 1.68e3
  • 2.05e3
  • 2.31e3
97.53
  • 97.53
  • 95.16
  • 94.39
  • 94.37
  • 93.15
  • 92.25
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
766
  • 766
  • 920
  • 940
  • 1.07e3
  • 1.47e3
  • 1.65e3
  • 2.19e3
  • 3.08e3
  • 3.65e3
  • 4.57e3
97.44
  • 97.44
  • 96.92
  • 96.86
  • 96.44
  • 95.09
  • 94.48
  • 92.67
  • 89.70
  • 87.77
  • 84.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
882
  • 882
  • 1.50e4
97.05
  • 97.05
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
961
  • 961
  • 1.03e3
  • 1.13e3
  • 1.18e3
  • 1.26e3
  • 1.32e3
  • 1.39e3
  • 1.40e3
  • 2.70e3
  • 3.17e3
  • 3.35e3
  • 4.49e3
  • 6.25e3
  • 7.69e3
  • 1.35e4
  • 1.44e4
  • 1.47e4
96.79
  • 96.79
  • 96.54
  • 96.21
  • 96.06
  • 95.79
  • 95.59
  • 95.35
  • 95.30
  • 90.95
  • 89.38
  • 88.77
  • 84.98
  • 79.06
  • 74.25
  • 54.83
  • 51.82
  • 50.68
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.51
  • 96.51
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.08e3
  • 1.08e3
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.11e3
  • 1.11e3
96.29
  • 96.29
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
1.16e3
  • 1.16e3
  • 1.24e3
  • 1.36e3
  • 1.98e3
  • 2.20e3
96.11
  • 96.11
  • 95.87
  • 95.46
  • 93.36
  • 92.63
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.24e3
  • 1.24e3
95.83
  • 95.83
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
  • 3.62e3
  • 8.86e3
  • 1.18e4
95.61
  • 95.61
  • 87.88
  • 70.33
  • 60.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.40e3
  • 1.40e3
  • 1.12e4
95.33
  • 95.33
  • 62.52
AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.50e3
  • 1.50e3
94.99
  • 94.99
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
1.74e3
  • 1.74e3
  • 1.34e4
94.19
  • 94.19
  • 54.97
AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
94.06
  • 94.06
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
93.33
  • 93.33
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.06e3
  • 2.06e3
93.10
  • 93.10
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.51e3
  • 2.51e3
  • 1.61e4
91.59
  • 91.59
  • 46.10
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.17e3
  • 3.17e3
89.38
  • 89.38
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.33e3
  • 3.33e3
88.86
  • 88.86
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.75
  • 88.75
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
3.70e3
  • 3.70e3
  • 4.24e3
  • 4.62e3
87.61
  • 87.61
  • 85.80
  • 84.53
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.51
  • 87.51
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.25
  • 87.25
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
  • 6.63e3
86.02
  • 86.02
  • 77.81
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000028Segmentation:26+ somites
4.57e3
  • 4.57e3
  • 1.39e4
  • 1.49e4
84.70
  • 84.70
  • 53.37
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.97e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.64e3
  • 9.33e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 80.00
  • 78.57
  • 78.57
  • 78.57
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 77.77
  • 68.74
  • 66.66
  • 64.99
  • 64.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.86e3
  • 5.86e3
80.39
  • 80.39
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.61e3
  • 6.61e3
77.87
  • 77.87
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.32e3
  • 7.32e3
75.50
  • 75.50
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
8.54e3
  • 8.54e3
  • 1.20e4
  • 1.29e4
71.42
  • 71.42
  • 59.98
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.88e3
  • 8.88e3
70.28
  • 70.28
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.35e3
  • 9.35e3
68.69
  • 68.69
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.49e4
66.67
  • 66.67
  • 49.98
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.98e3
  • 9.98e3
66.60
  • 66.60
AEIR
  • AEIR
UBERON:0003065ciliary marginal zone
  • ZFS:0000035Larval:Protruding-mouth
1.07e4
  • 1.07e4
64.28
  • 64.28
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
1.26e4
  • 1.26e4
  • 1.49e4
57.68
  • 57.68
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.33e4
57.14
  • 57.14
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000025Segmentation:10-13 somites
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
1.34e4
  • 1.34e4
  • 1.35e4
54.97
  • 54.97
  • 54.73
AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
1.34e4
  • 1.34e4
54.97
  • 54.97
AEIR
  • AEIR
UBERON:0002539pharyngeal arch
  • ZFS:0000035Larval:Protruding-mouth
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000035Larval:Protruding-mouth
1.37e4
  • 1.37e4
54.15
  • 54.15
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.38e4
  • 1.38e4
53.91
  • 53.91
AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0000740retinal ganglion cell
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0001890forebrain
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
49.97
  • 49.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000019507.

Cross-references

EnsemblENSDARG00000019507 (mcm5)
ZFINZDB-GENE-021209-1 (mcm5)
EMBLCR383684, FP101861
Uniprot/SPTREMBLF1QK71, F1QK71_DANRE

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