D. rerio Gene: uso1 - ENSDARG00000019581 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019581
Nameuso1
DescriptionUSO1 vesicle transport factor [Source:ZFIN;Acc:ZDB-GENE-040426-688]
OrganismDanio rerio (zebrafish)
Synonym(s)vdp, zgc:55298

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.14e3
  • 1.14e3
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.90e3
  • 1.90e3
  • 4.65e3
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.08e3
  • 2.08e3
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.28e3
  • 2.28e3
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
2.37e3
  • 2.37e3
  • 2.59e3
  • 2.69e3
  • 3.74e3
  • 3.87e3
  • 4.48e3
  • 4.98e3
  • 5.65e3
  • 5.94e3
  • 6.41e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
3.05e3
  • 3.05e3
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
3.18e3
  • 3.18e3
  • 3.29e3
  • 3.99e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
3.44e3
  • 3.44e3
  • 4.48e3
  • 5.29e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.88e3
  • 3.88e3
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.08e3
  • 4.08e3
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
  • 4.74e3
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
4.33e3
  • 4.33e3
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.49e3
  • 4.49e3
  • 5.72e3
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.66e3
  • 4.66e3
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.06e3
  • 5.06e3
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
5.07e3
  • 5.07e3
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
5.36e3
  • 5.36e3
  • 5.61e3
  • 7.27e3
  • 7.58e3
  • 7.63e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.57e3
  • 5.57e3
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
5.64e3
  • 5.64e3
  • 5.82e3
  • 5.91e3
  • 6.11e3
  • 6.11e3
  • 6.12e3
  • 6.19e3
  • 6.27e3
  • 6.42e3
  • 6.54e3
  • 6.58e3
  • 6.59e3
  • 6.65e3
  • 8.45e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.03e3
  • 6.03e3
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
6.74e3
  • 6.74e3
  • 6.77e3
  • 7.72e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.75e3
  • 6.75e3
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
7.89e3
  • 7.89e3
  • 8.46e3
  • 8.63e3
  • 8.88e3
  • 8.88e3
  • 9.87e3
  • 1.07e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.14e4
  • 1.14e4
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.30e4
  • 1.30e4
  • 1.33e4
  • 1.35e4
  • 1.35e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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