D. rerio Gene: pbx2 - ENSDARG00000019717 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019717
Namepbx2
Descriptionpre-B-cell leukemia homeobox 2 [Source:ZFIN;Acc:ZDB-GENE-000405-5]
OrganismDanio rerio (zebrafish)
Synonym(s)pbx2, pbxy, wu:fb73g03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
2.20e3
  • 2.20e3
92.57090
  • 92.57090
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
2.27e3
  • 2.27e3
  • 2.97e3
  • 3.12e3
  • 3.53e3
  • 3.54e3
  • 3.65e3
  • 4.41e3
  • 5.43e3
  • 6.93e3
  • 8.11e3
92.32082
  • 92.32082
  • 89.95837
  • 89.46505
  • 88.05675
  • 88.04522
  • 87.66285
  • 85.08952
  • 81.66627
  • 76.59172
  • 72.59024
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
2.79e3
  • 2.79e3
  • 2.90e3
  • 3.21e3
  • 3.25e3
  • 3.60e3
  • 3.66e3
  • 3.69e3
  • 3.72e3
  • 3.85e3
  • 4.21e3
  • 4.81e3
  • 4.93e3
  • 5.03e3
  • 5.06e3
  • 5.40e3
  • 6.48e3
  • 6.58e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.73e3
  • 6.91e3
  • 6.97e3
  • 7.40e3
  • 7.40e3
  • 7.84e3
  • 8.88e3
  • 8.88e3
90.57382
  • 90.57382
  • 90.21779
  • 89.15186
  • 89.01128
  • 87.82351
  • 87.62972
  • 87.52404
  • 87.41390
  • 86.99812
  • 85.78681
  • 83.73845
  • 83.32826
  • 83.00109
  • 82.91352
  • 81.74603
  • 78.11654
  • 77.76763
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 77.26767
  • 76.65821
  • 76.46123
  • 74.99322
  • 74.99322
  • 73.51758
  • 69.98817
  • 69.98817
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.90e3
  • 2.90e3
  • 3.14e3
90.20514
  • 90.20514
  • 89.38765
AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.08e3
  • 3.08e3
89.57846
  • 89.57846
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.12e3
  • 3.12e3
89.45414
  • 89.45414
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
3.45e3
  • 3.45e3
88.35618
  • 88.35618
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
3.48e3
  • 3.48e3
  • 3.59e3
  • 4.39e3
  • 4.74e3
  • 7.87e3
88.24319
  • 88.24319
  • 87.88157
  • 85.15870
  • 83.98929
  • 73.40882
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.60e3
  • 3.60e3
87.82738
  • 87.82738
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
3.72e3
  • 3.72e3
  • 4.83e3
  • 5.45e3
87.44127
  • 87.44127
  • 83.68770
  • 81.58366
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.90e3
  • 3.90e3
86.82169
  • 86.82169
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
4.05e3
  • 4.05e3
  • 5.51e3
  • 5.67e3
86.31230
  • 86.31230
  • 81.36981
  • 80.84250
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.32e3
  • 4.32e3
85.39499
  • 85.39499
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
4.36e3
  • 4.36e3
85.28207
  • 85.28207
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.02020
  • 85.02020
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.83e3
  • 4.83e3
83.66643
  • 83.66643
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.94e3
  • 4.94e3
  • 1.26e4
83.31184
  • 83.31184
  • 57.33735
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
5.11e3
  • 5.11e3
82.71786
  • 82.71786
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.92e3
  • 5.92e3
79.99171
  • 79.99171
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
6.05e3
  • 6.05e3
79.57176
  • 79.57176
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.06e3
  • 6.06e3
79.53121
  • 79.53121
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.30e3
  • 6.30e3
78.71664
  • 78.71664
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
6.47e3
  • 6.47e3
  • 7.01e3
78.14351
  • 78.14351
  • 76.30338
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.59360
  • 75.59360
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
7.75e3
  • 7.75e3
  • 8.29e3
  • 1.11e4
73.80075
  • 73.80075
  • 71.97884
  • 62.31785
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.87e3
  • 7.87e3
73.39151
  • 73.39151
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.98e3
  • 8.98e3
69.65744
  • 69.65744
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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