D. rerio Gene: si:ch211-152f23.5 - ENSDARG00000019741 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019741
Namesi:ch211-152f23.5
Descriptionsi:ch211-152f23.5 [Source:ZFIN;Acc:ZDB-GENE-080917-47]
OrganismDanio rerio (zebrafish)
Synonym(s)ccndx, im:7162084

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
8.06e3
  • 8.06e3
  • 2.31e4
73.01
  • 73.01
  • 22.69
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
9.60e3
  • 9.60e3
  • 9.96e3
  • 1.02e4
  • 1.05e4
  • 1.05e4
  • 1.07e4
67.85
  • 67.85
  • 66.65
  • 65.77
  • 64.69
  • 64.69
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
9.96e3
  • 9.96e3
  • 1.41e4
  • 1.50e4
66.65
  • 66.65
  • 52.86
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.02e4
  • 1.02e4
  • 1.09e4
  • 1.18e4
  • 1.23e4
65.89
  • 65.89
  • 63.61
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.15e4
  • 1.28e4
  • 1.29e4
65.61
  • 65.61
  • 65.61
  • 62.48
  • 62.48
  • 61.53
  • 61.34
  • 57.13
  • 56.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
  • 1.08e4
  • 1.23e4
  • 1.81e4
  • 2.37e4
64.96
  • 64.96
  • 63.77
  • 58.88
  • 39.49
  • 20.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.25e4
  • 1.25e4
58.09
  • 58.09
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.28e4
  • 1.28e4
57.15
  • 57.15
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000019741 (si:ch211-152f23.5)
ZFINZDB-GENE-080917-47 (si:ch211-152f23.5)
Uniprot/SPTREMBLF1QNY8, F1QNY8_DANRE

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