D. rerio Gene: cnot3b - ENSDARG00000019842 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019842
Namecnot3b
DescriptionCCR4-NOT transcription complex, subunit 3b [Source:ZFIN;Acc:ZDB-GENE-030131-5838]
OrganismDanio rerio (zebrafish)
Synonym(s)cnot3, wu:fi20g07, zgc:55934
Orthologs(s)7 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
2.14e3
  • 2.14e3
  • 2.35e3
  • 5.49e3
  • 7.16e3
  • 7.22e3
92.83
  • 92.83
  • 92.12
  • 81.61
  • 76.01
  • 75.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
4.23e3
  • 4.23e3
  • 1.13e4
  • 1.20e4
85.82
  • 85.82
  • 62.01
  • 59.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
85.35
  • 85.35
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
4.41e3
  • 4.41e3
  • 6.13e3
  • 6.61e3
  • 8.64e3
  • 9.91e3
  • 1.02e4
  • 1.05e4
  • 1.14e4
  • 1.23e4
  • 1.32e4
85.23
  • 85.23
  • 79.47
  • 77.86
  • 71.07
  • 66.82
  • 65.81
  • 64.84
  • 61.79
  • 58.74
  • 55.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
4.44e3
  • 4.44e3
85.12
  • 85.12
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
4.60e3
  • 4.60e3
  • 6.67e3
  • 7.46e3
  • 8.70e3
  • 8.74e3
  • 1.11e4
84.60
  • 84.60
  • 77.67
  • 75.02
  • 70.86
  • 70.72
  • 62.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.87e3
  • 4.87e3
83.70
  • 83.70
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000106zygote stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • ZFS:0000049segmentation
4.98e3
  • 4.98e3
  • 6.45e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.50e3
  • 8.96e3
  • 8.96e3
  • 9.59e3
  • 9.62e3
  • 9.94e3
  • 9.95e3
  • 1.01e4
  • 1.02e4
  • 1.04e4
  • 1.06e4
  • 1.08e4
  • 1.09e4
  • 1.10e4
  • 1.11e4
  • 1.29e4
  • 1.48e4
  • 1.49e4
83.33
  • 83.33
  • 78.42
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 71.54
  • 69.99
  • 69.99
  • 67.90
  • 67.77
  • 66.73
  • 66.70
  • 66.06
  • 65.91
  • 65.13
  • 64.51
  • 63.75
  • 63.43
  • 63.22
  • 62.68
  • 56.79
  • 50.61
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
6.13e3
  • 6.13e3
79.47
  • 79.47
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.17e3
  • 6.17e3
79.35
  • 79.35
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
6.45e3
  • 6.45e3
78.41
  • 78.41
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.36e3
  • 7.36e3
75.35
  • 75.35
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
75.21
  • 75.21
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.34e3
  • 8.34e3
72.06
  • 72.06
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
  • 1.08e4
71.02
  • 71.02
  • 63.75
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.81e3
  • 8.81e3
70.51
  • 70.51
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
8.86e3
  • 8.86e3
70.34
  • 70.34
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.04e3
  • 9.04e3
69.75
  • 69.75
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
9.09e3
  • 9.09e3
69.57
  • 69.57
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
9.20e3
  • 9.20e3
69.20
  • 69.20
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
9.30e3
  • 9.30e3
68.85
  • 68.85
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
9.31e3
  • 9.31e3
68.83
  • 68.83
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.64e3
  • 9.64e3
67.72
  • 67.72
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.64e3
  • 9.64e3
67.72
  • 67.72
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.95e3
  • 9.95e3
66.68
  • 66.68
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.07e4
  • 1.07e4
64.06
  • 64.06
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.86
  • 63.86
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.74
  • 62.74
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.21
  • 62.21
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.18e4
  • 1.18e4
  • 1.44e4
60.40
  • 60.40
  • 51.82
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
  • 1.26e4
59.75
  • 59.75
  • 57.75
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.29
  • 59.29
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
1.28e4
  • 1.28e4
  • 1.33e4
  • 1.38e4
57.06
  • 57.06
  • 55.42
  • 53.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.29e4
56.89
  • 56.89
  • 56.85
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Bilateria7 species7 genesCompare expression

Orthology information comes from OMA : ENSDARG00000019842.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000019842.

Cross-references

EnsemblENSDARG00000019842 (cnot3b)
ZFINZDB-GENE-030131-5838 (cnot3b)
EMBLBX950195
Uniprot/SPTREMBLE9QCW3, E9QCW3_DANRE, F1R2E2, F1R2E2_DANRE, Q1LUD8, Q1LUD8_DANRE

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