D. rerio Gene: pdlim1 - ENSDARG00000019845 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019845
Namepdlim1
DescriptionPDZ and LIM domain 1 (elfin) [Source:ZFIN;Acc:ZDB-GENE-030131-5227]
OrganismDanio rerio (zebrafish)
Synonym(s)clim1, elfin, wu:fa19a03, wu:fy34f10, zgc:110681

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
683
  • 683
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
830
  • 830
  • 887
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
836
  • 836
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.30e3
  • 1.30e3
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.66e3
  • 1.66e3
  • 1.00e4
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000068embryo stage
  • ZFS:0000025Segmentation:10-13 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
1.74e3
  • 1.74e3
  • 1.93e3
  • 2.24e3
  • 2.40e3
  • 2.40e3
  • 2.56e3
  • 3.44e3
  • 3.64e3
  • 3.66e3
  • 4.17e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.11e3
  • 2.11e3
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.31e3
  • 2.31e3
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
2.47e3
  • 2.47e3
  • 1.35e4
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.03e3
  • 3.03e3
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.22e3
  • 3.22e3
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.25e3
  • 3.25e3
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
3.30e3
  • 3.30e3
  • 3.70e3
  • 4.80e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.59e3
  • 3.59e3
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000106zygote stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
3.65e3
  • 3.65e3
  • 3.78e3
  • 4.42e3
  • 4.51e3
  • 4.59e3
  • 4.62e3
  • 4.62e3
  • 5.07e3
  • 5.91e3
  • 7.00e3
  • 7.14e3
  • 7.21e3
  • 7.42e3
  • 7.72e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.35e3
  • 4.35e3
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.60e3
  • 4.60e3
  • 4.64e3
  • 5.79e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
4.74e3
  • 4.74e3
  • 5.44e3
  • 6.22e3
  • 6.38e3
  • 6.65e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.93e3
  • 4.93e3
  • 4.93e3
  • 4.93e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.52e3
  • 5.52e3
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.94e3
  • 5.94e3
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.23e3
  • 6.23e3
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.50e3
  • 6.50e3
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.52e3
  • 6.52e3
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.88e3
  • 8.88e3
  • 9.42e3
  • 9.42e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.62e3
  • 9.62e3
  • 9.62e3
  • 9.87e3
  • 1.13e4
  • 1.20e4
  • 1.31e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.62e3
  • 9.62e3
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.80e3
  • 9.80e3
  • 1.09e4
  • 1.30e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000926mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.87e3
  • 9.87e3
  • 9.87e3
  • 9.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
1.09e4
  • 1.09e4
AEIR
  • AEIR
UBERON:0002037cerebellum
  • ZFS:0000033Hatching:Long-pec
1.16e4
  • 1.16e4
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.17e4
  • 1.17e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
UBERON:0000941cranial nerve II
  • ZFS:0000033Hatching:Long-pec
1.18e4
  • 1.18e4
AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.20e4
  • 1.20e4
  • 1.28e4
AEIR
  • AEIR
  • AEIR
UBERON:0001789outer nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
1.23e4
  • 1.23e4
AEIR
  • AEIR
UBERON:2001073axial vasculature
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.23e4
  • 1.23e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.25e4
  • 1.25e4
  • 1.39e4
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
1.26e4
  • 1.26e4
  • 1.33e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
1.30e4
  • 1.30e4
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.32e4
  • 1.32e4
  • 1.40e4
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
1.32e4
  • 1.32e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
1.33e4
  • 1.33e4
  • 1.33e4
AEIR
  • AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
1.37e4
  • 1.37e4
  • 1.37e4
  • 1.37e4
  • 1.37e4
  • 1.37e4
  • 1.38e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
1.40e4
  • 1.40e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0000959optic chiasma
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0001943midbrain tegmentum
  • ZFS:0000036Larval:Day 4
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000017exocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0000016endocrine pancreas
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
UBERON:0003052midbrain-hindbrain boundary
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
1.48e4
  • 1.48e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000033Hatching:Long-pec
1.48e4
  • 1.48e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX663512
EnsemblENSDARG00000019845 (pdlim1)
Uniprot/SPTREMBLB8A5V5, B8A5V5_DANRE, B8A5V6, B8A5V6_DANRE
ZFINZDB-GENE-030131-5227 (pdlim1)

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