D. rerio Gene: atp1a1b - ENSDARG00000019856 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019856
Nameatp1a1b
DescriptionATPase, Na+/K+ transporting, alpha 1b polypeptide [Source:ZFIN;Acc:ZDB-GENE-001212-5]
OrganismDanio rerio (zebrafish)
Synonym(s)atp1a1l5, atp[a]1b2, cb707, wu:fj34g01, zgc:92351
Orthologs(s)25 orthologs
Paralog(s)9 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
448
  • 448
  • 7.32e3
  • 1.41e4
98.50
  • 98.50
  • 75.48
  • 52.72
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
927
  • 927
  • 1.04e3
96.90
  • 96.90
  • 96.51
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
975
  • 975
  • 2.02e3
  • 4.70e3
  • 4.91e3
  • 5.87e3
  • 6.58e3
  • 1.22e4
  • 1.39e4
  • 1.40e4
  • 1.41e4
96.74
  • 96.74
  • 93.25
  • 84.28
  • 83.58
  • 80.35
  • 77.96
  • 59.08
  • 53.35
  • 53.03
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.01e3
  • 1.01e3
96.63
  • 96.63
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.18e3
  • 1.18e3
  • 1.42e3
  • 2.38e3
96.05
  • 96.05
  • 95.26
  • 92.04
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
1.22e3
  • 1.22e3
  • 1.79e3
  • 2.81e3
  • 3.67e3
  • 5.39e3
  • 7.96e3
  • 9.09e3
  • 1.14e4
  • 1.18e4
  • 1.19e4
  • 1.20e4
  • 1.28e4
  • 1.35e4
  • 1.47e4
  • 1.47e4
  • 1.49e4
95.91
  • 95.91
  • 94.02
  • 90.60
  • 87.73
  • 81.95
  • 73.36
  • 69.56
  • 61.68
  • 60.58
  • 60.22
  • 59.69
  • 57.21
  • 54.84
  • 50.90
  • 50.68
  • 50.20
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.46e3
  • 2.46e3
  • 7.10e3
91.76
  • 91.76
  • 76.24
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
  • 7.48e3
  • 8.69e3
  • 9.42e3
89.01
  • 89.01
  • 74.95
  • 70.91
  • 68.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.94e3
  • 3.94e3
86.81
  • 86.81
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.48e3
  • 4.48e3
84.99
  • 84.99
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.76e3
  • 5.76e3
80.71
  • 80.71
AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
7.08e3
  • 7.08e3
  • 7.47e3
  • 8.09e3
  • 1.10e4
  • 1.10e4
76.30
  • 76.30
  • 74.99
  • 72.90
  • 63.14
  • 63.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 7.47e3
  • 8.04e3
  • 8.04e3
  • 8.71e3
74.99
  • 74.99
  • 74.99
  • 73.07
  • 73.07
  • 70.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.73e3
  • 7.73e3
74.11
  • 74.11
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
7.83e3
  • 7.83e3
  • 8.22e3
  • 9.07e3
  • 9.71e3
  • 1.02e4
  • 1.04e4
  • 1.05e4
73.79
  • 73.79
  • 72.48
  • 69.62
  • 67.48
  • 65.77
  • 65.19
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.22e3
  • 8.22e3
  • 8.22e3
  • 8.54e3
  • 1.02e4
  • 1.09e4
72.48
  • 72.48
  • 72.48
  • 71.41
  • 65.89
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
8.45e3
  • 8.45e3
  • 8.65e3
  • 8.72e3
  • 1.04e4
  • 1.09e4
71.72
  • 71.72
  • 71.04
  • 70.81
  • 65.19
  • 63.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
9.75e3
  • 9.75e3
  • 1.34e4
67.35
  • 67.35
  • 55.22
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.92e3
  • 9.92e3
66.77
  • 66.77
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.01e4
  • 1.01e4
66.19
  • 66.19
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.10e4
  • 1.10e4
63.27
  • 63.27
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
62.43
  • 62.43
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.25e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
  • 1.39e4
61.88
  • 61.88
  • 59.98
  • 58.31
  • 58.31
  • 58.31
  • 57.47
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
1.15e4
  • 1.15e4
  • 1.66e4
  • 1.69e4
  • 1.72e4
  • 1.75e4
61.58
  • 61.58
  • 44.34
  • 43.58
  • 42.33
  • 41.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.38
  • 59.38
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
57.13
  • 57.13
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
54.72
  • 54.72
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.36e4
  • 1.36e4
54.42
  • 54.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.93
  • 47.93
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.07
  • 47.07
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.07
  • 47.07
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.59e4
  • 1.59e4
46.84
  • 46.84
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.71
  • 43.71
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000019856.

Paralogs (same species)

Paralogy information comes from OMA : ENSDARG00000019856.

Cross-references

EnsemblENSDARG00000019856 (atp1a1b)
ZFINZDB-GENE-001212-5 (atp1a1b)
EMBLAL807829
Uniprot/SPTREMBLB0R068, B0R068_DANRE

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