D. rerio Gene: sfxn1 - ENSDARG00000019963 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000019963
Namesfxn1
Descriptionsideroflexin 1 [Source:ZFIN;Acc:ZDB-GENE-040801-45]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:100851
Orthologs(s)28 orthologs
Paralog(s)4 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.43e3
  • 2.43e3
91.87
  • 91.87
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.15e3
  • 5.15e3
82.77
  • 82.77
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.49e3
  • 6.49e3
  • 1.08e4
78.26
  • 78.26
  • 63.69
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
6.52e3
  • 6.52e3
  • 1.02e4
  • 1.44e4
  • 1.54e4
  • 1.73e4
78.18
  • 78.18
  • 65.98
  • 51.82
  • 48.28
  • 42.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
6.80e3
  • 6.80e3
  • 6.88e3
77.22
  • 77.22
  • 76.96
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.94e3
  • 6.94e3
76.77
  • 76.77
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.56e3
  • 8.56e3
71.33
  • 71.33
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
8.96e3
  • 8.96e3
  • 8.96e3
  • 8.96e3
  • 1.23e4
  • 1.23e4
  • 1.31e4
  • 1.32e4
  • 1.32e4
69.99
  • 69.99
  • 69.99
  • 69.99
  • 58.80
  • 58.80
  • 56.23
  • 55.86
  • 55.86
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.05e4
  • 1.05e4
  • 1.45e4
64.81
  • 64.81
  • 51.40
AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.07e4
  • 1.07e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
64.27
  • 64.27
  • 55.24
  • 52.92
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001892rhombomere
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.17e4
  • 1.17e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
60.70
  • 60.70
  • 49.98
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.98
  • 59.98
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.27e4
  • 1.27e4
  • 1.30e4
  • 1.34e4
  • 1.34e4
  • 1.42e4
57.47
  • 57.47
  • 56.49
  • 54.97
  • 54.97
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.28e4
  • 1.28e4
  • 1.29e4
  • 1.34e4
  • 1.34e4
57.13
  • 57.13
  • 56.65
  • 55.24
  • 54.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.29e4
  • 1.29e4
  • 1.34e4
  • 1.36e4
  • 1.41e4
56.79
  • 56.79
  • 55.24
  • 54.52
  • 52.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.34e4
  • 1.34e4
  • 1.41e4
  • 1.41e4
  • 1.41e4
55.24
  • 55.24
  • 52.92
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
  • 1.34e4
  • 1.42e4
54.97
  • 54.97
  • 54.97
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.35e4
  • 1.35e4
  • 2.01e4
54.64
  • 54.64
  • 32.57
AEIR
  • AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.40e4
  • 1.40e4
  • 1.40e4
  • 1.49e4
  • 1.49e4
53.10
  • 53.10
  • 53.10
  • 49.98
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.12
  • 52.12
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
  • 1.76e4
52.07
  • 52.07
  • 41.03
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
51.95
  • 51.95
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.45e4
  • 1.45e4
51.46
  • 51.46
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
49.18
  • 49.18
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.54e4
  • 1.54e4
48.43
  • 48.43
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.82
  • 42.82
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.77e4
  • 1.77e4
40.65
  • 40.65
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.85e4
  • 1.85e4
37.95
  • 37.95
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.08e4
  • 2.08e4
30.51
  • 30.51
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi17 species17 genesCompare expression
Bilateria24 species28 genesCompare expression

Orthology information comes from OMA : ENSDARG00000019963.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Opisthokonta4 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000019963.

Cross-references

EnsemblENSDARG00000019963 (sfxn1)
ZFINZDB-GENE-040801-45 (sfxn1)
EMBLCR855307, CU657979
Uniprot/SPTREMBLF1QA91, F1QA91_DANRE, F1R5W5, F1R5W5_DANRE

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