D. rerio Gene: sh3bp4a - ENSDARG00000020000 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020000
Namesh3bp4a
DescriptionSH3-domain binding protein 4a [Source:ZFIN;Acc:ZDB-GENE-040303-3]
OrganismDanio rerio (zebrafish)
Synonym(s)q4v977, q76ju7, sh3bp4
Orthologs(s)17 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:2000001Kupffer's vesicle
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.87e3
  • 1.87e3
  • 6.22e3
  • 6.89e3
  • 6.89e3
93.75
  • 93.75
  • 79.16
  • 76.92
  • 76.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
5.62e3
  • 5.62e3
  • 9.44e3
81.19
  • 81.19
  • 68.39
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000026Segmentation:14-19 somites
6.22e3
  • 6.22e3
79.16
  • 79.16
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
6.33e3
  • 6.33e3
78.80
  • 78.80
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
6.52e3
  • 6.52e3
78.17
  • 78.17
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
6.53e3
  • 6.53e3
  • 6.64e3
  • 8.58e3
  • 9.64e3
  • 1.08e4
78.13
  • 78.13
  • 77.78
  • 71.29
  • 67.71
  • 63.71
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003073lens placode
  • ZFS:0000026Segmentation:14-19 somites
6.64e3
  • 6.64e3
77.77
  • 77.77
AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
6.64e3
  • 6.64e3
  • 6.64e3
  • 7.47e3
  • 7.97e3
  • 8.04e3
  • 8.71e3
  • 9.34e3
  • 9.96e3
  • 1.03e4
77.77
  • 77.77
  • 77.77
  • 74.99
  • 73.32
  • 73.07
  • 70.82
  • 68.74
  • 66.66
  • 65.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
6.64e3
  • 6.64e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.91e3
  • 1.15e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
77.77
  • 77.77
  • 76.66
  • 76.46
  • 74.99
  • 73.52
  • 61.34
  • 50.25
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
6.83e3
  • 6.83e3
  • 6.89e3
77.13
  • 77.13
  • 76.92
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
7.40e3
  • 7.40e3
75.21
  • 75.21
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
7.74e3
  • 7.74e3
  • 1.17e4
74.08
  • 74.08
  • 60.76
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.24e3
  • 8.24e3
72.42
  • 72.42
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
  • 1.12e4
72.15
  • 72.15
  • 62.45
AEIR
  • AEIR
  • AEIR
UBERON:0003071eye primordium
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
8.54e3
  • 8.54e3
  • 9.19e3
  • 9.19e3
71.42
  • 71.42
  • 69.22
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
8.75e3
  • 8.75e3
70.70
  • 70.70
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
8.99e3
  • 8.99e3
  • 1.67e4
69.89
  • 69.89
  • 44.14
AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
67.63
  • 67.63
  • 65.61
  • 62.48
  • 62.48
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.71e3
  • 9.71e3
  • 1.02e4
  • 1.18e4
  • 1.20e4
67.48
  • 67.48
  • 65.89
  • 60.50
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.73e3
  • 9.73e3
67.41
  • 67.41
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
9.96e3
  • 9.96e3
  • 1.02e4
66.65
  • 66.65
  • 65.77
AEIR
  • AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.03e4
  • 1.03e4
  • 1.12e4
65.37
  • 65.37
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.04e4
  • 1.04e4
  • 1.09e4
65.19
  • 65.19
  • 63.61
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.08e4
  • 1.12e4
64.98
  • 64.98
  • 64.98
  • 63.76
  • 62.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.97
  • 64.97
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.10e4
  • 1.10e4
  • 1.17e4
63.32
  • 63.32
  • 60.70
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.25
  • 60.25
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.58
  • 59.58
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.26e4
  • 1.26e4
57.91
  • 57.91
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.48
  • 55.48
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.32
  • 55.32
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.39e4
  • 1.39e4
53.52
  • 53.52
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.52e4
  • 1.52e4
48.99
  • 48.99
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.80
  • 47.80
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.56e4
  • 1.56e4
47.65
  • 47.65
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.58e4
  • 1.58e4
47.18
  • 47.18
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.68
  • 46.68
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.89
  • 43.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Vertebrata1 geneCompare expression
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020000.

Cross-references

EnsemblENSDARG00000020000 (sh3bp4a)
ZFINZDB-GENE-040303-3 (sh3bp4a)
EMBLAB095747, BC097028, BX649510
Uniprot/SPTREMBLF1Q812, F1Q812_DANRE, F1QCM3, F1QCM3_DANRE
Uniprot/SWISSPROTQ1LVQ2, SH34A_DANRE

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