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D. rerio Gene: rad23aa - ENSDARG00000020001 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020001
Namerad23aa
DescriptionRAD23 homolog A, nucleotide excision repair protein a [Source:ZFIN;Acc:ZDB-GENE-040808-59]
OrganismDanio rerio (zebrafish)
Synonym(s)rad23a, wu:fe11h06, zgc:92001
Orthologs(s)28 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.08
  • 91.08
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
3.24e3
  • 3.24e3
  • 4.46e3
  • 5.23e3
  • 5.30e3
  • 6.94e3
  • 1.04e4
  • 1.06e4
  • 1.17e4
  • 1.23e4
  • 1.26e4
89.15
  • 89.15
  • 85.05
  • 82.50
  • 82.24
  • 76.75
  • 65.06
  • 64.65
  • 60.93
  • 58.95
  • 57.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.79e3
  • 4.79e3
  • 8.01e3
83.97
  • 83.97
  • 73.19
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
5.27e3
  • 5.27e3
  • 5.71e3
  • 8.28e3
  • 1.04e4
  • 1.07e4
  • 1.11e4
82.35
  • 82.35
  • 80.88
  • 72.27
  • 65.15
  • 64.31
  • 62.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.42e3
  • 5.42e3
81.86
  • 81.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
5.60e3
  • 5.60e3
81.27
  • 81.27
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.88e3
  • 5.88e3
80.31
  • 80.31
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.90e3
  • 5.90e3
80.25
  • 80.25
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.46e3
  • 6.46e3
78.38
  • 78.38
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
6.77e3
  • 6.77e3
  • 7.70e3
  • 8.23e3
  • 8.83e3
77.35
  • 77.35
  • 74.23
  • 72.45
  • 70.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
6.85e3
  • 6.85e3
  • 7.79e3
77.06
  • 77.06
  • 73.91
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
7.03e3
  • 7.03e3
76.45
  • 76.45
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.06e3
  • 7.06e3
76.38
  • 76.38
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.09e3
  • 7.09e3
76.26
  • 76.26
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.14e3
  • 7.14e3
76.11
  • 76.11
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.43e3
  • 7.43e3
75.14
  • 75.14
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
7.47e3
  • 7.47e3
  • 9.75e3
  • 1.07e4
  • 1.66e4
74.99
  • 74.99
  • 67.35
  • 64.11
  • 44.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.76
  • 74.76
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.64e3
  • 7.64e3
74.43
  • 74.43
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
7.84e3
  • 7.84e3
  • 1.22e4
  • 1.39e4
73.74
  • 73.74
  • 59.10
  • 53.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
8.68e3
  • 8.68e3
70.93
  • 70.93
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
8.71e3
  • 8.71e3
  • 1.31e4
70.85
  • 70.85
  • 56.09
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
9.71e3
  • 9.71e3
67.49
  • 67.49
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.99
  • 62.99
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
1.11e4
  • 1.11e4
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.23e4
  • 1.30e4
  • 1.34e4
  • 1.37e4
  • 1.39e4
  • 1.43e4
  • 1.47e4
  • 1.48e4
  • 1.50e4
  • 1.51e4
62.98
  • 62.98
  • 62.50
  • 62.47
  • 61.39
  • 58.74
  • 56.46
  • 55.02
  • 53.98
  • 53.55
  • 52.06
  • 50.74
  • 50.42
  • 49.76
  • 49.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.11e4
  • 1.11e4
62.96
  • 62.96
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.53
  • 61.53
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.89
  • 59.89
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.20e4
  • 1.20e4
59.66
  • 59.66
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
  • 1.28e4
58.18
  • 58.18
  • 57.05
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.61e4
  • 1.61e4
46.23
  • 46.23
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.18
  • 39.18
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species16 genesCompare expression
Bilateria23 species28 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020001.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Chordata1 geneCompare expression
Bilateria2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020001.

Cross-references

EnsemblENSDARG00000020001 (rad23aa)
ZFINZDB-GENE-040808-59 (rad23aa)
EMBLCABZ01035172, CU856511
Uniprot/SPTREMBLF1QHZ1, F1QHZ1_DANRE

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