D. rerio Gene: slc20a1a - ENSDARG00000020114 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020114
Nameslc20a1a
Descriptionsolute carrier family 20, member 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2217]
OrganismDanio rerio (zebrafish)
Synonym(s)sb:cb1011, zgc:85672

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
369
  • 369
98.77
  • 98.77
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
581
  • 581
98.06
  • 98.06
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.18e3
  • 1.18e3
96.05
  • 96.05
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.05
  • 95.05
AEIR
  • AEIR
UBERON:0007298pronephric proximal convoluted tubule
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
  • ZFS:0000037Larval:Day 5
2.49e3
  • 2.49e3
  • 2.99e3
  • 4.98e3
  • 4.98e3
  • 1.49e4
  • 1.49e4
91.67
  • 91.67
  • 90.00
  • 83.34
  • 83.34
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.50e3
  • 2.50e3
91.63
  • 91.63
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
2.74e3
  • 2.74e3
  • 1.04e4
90.84
  • 90.84
  • 65.14
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
3.49e3
  • 3.49e3
88.33
  • 88.33
AEIR
  • AEIR
UBERON:0009622pronephric proximal straight tubule
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
3.73e3
  • 3.73e3
  • 1.07e4
  • 1.49e4
87.50
  • 87.50
  • 64.28
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.81e3
  • 3.81e3
87.24
  • 87.24
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.14e3
  • 4.14e3
86.13
  • 86.13
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
4.27e3
  • 4.27e3
  • 1.08e4
85.69
  • 85.69
  • 63.76
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.47e3
  • 5.47e3
81.68
  • 81.68
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.63e3
  • 5.63e3
81.16
  • 81.16
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
5.99e3
  • 5.99e3
  • 1.03e4
79.95
  • 79.95
  • 65.44
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.30e3
  • 6.30e3
78.91
  • 78.91
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
9.20e3
  • 9.20e3
69.21
  • 69.21
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000033Hatching:Long-pec
9.32e3
  • 9.32e3
  • 1.07e4
  • 1.22e4
  • 1.32e4
  • 1.36e4
68.80
  • 68.80
  • 64.07
  • 59.18
  • 55.95
  • 54.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
9.45e3
  • 9.45e3
68.38
  • 68.38
AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
9.67e3
  • 9.67e3
  • 1.05e4
  • 1.12e4
  • 1.12e4
  • 1.20e4
  • 1.21e4
  • 1.26e4
  • 1.41e4
67.63
  • 67.63
  • 64.98
  • 62.48
  • 62.48
  • 59.98
  • 59.36
  • 57.87
  • 52.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.12e4
  • 1.12e4
  • 1.14e4
  • 1.20e4
62.48
  • 62.48
  • 61.75
  • 59.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
61.70
  • 61.70
  • 50.20
  • 49.99
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.15e4
  • 1.15e4
61.62
  • 61.62
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
59.27
  • 59.27
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000029Pharyngula:Prim-5
1.31e4
  • 1.31e4
56.23
  • 56.23
AEIR
  • AEIR
UBERON:0002065posterior cardinal vein
  • ZFS:0000029Pharyngula:Prim-5
1.36e4
  • 1.36e4
54.53
  • 54.53
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.37e4
  • 1.37e4
54.03
  • 54.03
AEIR
  • AEIR
UBERON:0010534primitive mesonephric nephron
  • ZFS:0000039Larval:Days 7-13
  • ZFS:0000041Larval:Days 21-29
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:2001063posterior caudal vein
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.56e4
  • 1.56e4
47.86
  • 47.86
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
1.59e4
  • 1.59e4
  • 1.61e4
46.59
  • 46.59
  • 46.03
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.84e4
  • 1.84e4
38.29
  • 38.29
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EMBLCR376723
EnsemblENSDARG00000020114 (slc20a1a)
Uniprot/SPTREMBLB0UXI6, B0UXI6_DANRE, F1Q8H5, F1Q8H5_DANRE
ZFINZDB-GENE-040426-2217 (slc20a1a)

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