D. rerio Gene: pah - ENSDARG00000020143 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020143
Namepah
Descriptionphenylalanine hydroxylase [Source:ZFIN;Acc:ZDB-GENE-031006-2]
OrganismDanio rerio (zebrafish)
Synonym(s)cb877, wu:fb02f10, zgc:65981
Orthologs(s)26 orthologs
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
375
  • 375
98.75
  • 98.75
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
404
  • 404
  • 7.47e3
  • 9.25e3
98.65
  • 98.65
  • 74.99
  • 69.03
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
495
  • 495
  • 1.40e3
98.35
  • 98.35
  • 95.32
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
602
  • 602
97.99
  • 97.99
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.50
  • 95.50
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.95e3
  • 1.95e3
93.46
  • 93.46
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.21e3
  • 2.21e3
  • 3.09e3
  • 3.33e3
92.60
  • 92.60
  • 89.64
  • 88.84
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
2.64e3
  • 2.64e3
  • 2.88e3
  • 2.94e3
  • 4.39e3
  • 5.78e3
  • 7.46e3
  • 7.67e3
  • 1.28e4
  • 1.40e4
  • 1.47e4
  • 1.49e4
  • 1.77e4
  • 1.78e4
  • 1.78e4
91.15
  • 91.15
  • 90.35
  • 90.15
  • 85.29
  • 80.66
  • 75.02
  • 74.31
  • 57.23
  • 53.03
  • 50.90
  • 49.99
  • 40.62
  • 40.56
  • 40.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.14e3
  • 3.14e3
  • 4.84e3
89.50
  • 89.50
  • 83.79
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
3.31e3
  • 3.31e3
  • 4.29e3
  • 4.94e3
  • 6.60e3
  • 6.76e3
  • 6.78e3
  • 6.86e3
  • 1.75e4
  • 1.78e4
88.91
  • 88.91
  • 85.63
  • 83.45
  • 77.91
  • 77.38
  • 77.29
  • 77.03
  • 41.29
  • 40.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000147pigment cell
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
3.32e3
  • 3.32e3
  • 4.98e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
88.89
  • 88.89
  • 83.33
  • 75.00
  • 75.00
  • 75.00
  • 74.99
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.84e3
  • 3.84e3
87.13
  • 87.13
AEIR
  • AEIR
UBERON:0010170region of neural crest
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
4.48e3
  • 4.48e3
  • 4.98e3
  • 5.43e3
  • 7.47e3
85.00
  • 85.00
  • 83.33
  • 81.81
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
6.11e3
  • 6.11e3
79.54
  • 79.54
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
6.72e3
  • 6.72e3
  • 7.80e3
  • 1.01e4
  • 1.24e4
77.49
  • 77.49
  • 73.90
  • 66.34
  • 58.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.33e3
  • 7.33e3
75.45
  • 75.45
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.44e3
  • 7.44e3
75.10
  • 75.10
AEIR
  • AEIR
UBERON:0000965lens of camera-type eye
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 7.97e3
74.99
  • 74.99
  • 73.32
AEIR
  • AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
7.91e3
  • 7.91e3
  • 8.79e3
  • 9.67e3
  • 9.71e3
  • 9.71e3
  • 9.96e3
  • 1.03e4
73.52
  • 73.52
  • 70.57
  • 67.63
  • 67.48
  • 67.48
  • 66.65
  • 65.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.91e3
  • 7.91e3
  • 8.96e3
  • 8.96e3
73.52
  • 73.52
  • 69.99
  • 69.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
7.97e3
  • 7.97e3
  • 8.40e3
  • 8.71e3
  • 9.19e3
73.32
  • 73.32
  • 71.86
  • 70.82
  • 69.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.65e3
  • 8.65e3
  • 8.65e3
71.04
  • 71.04
  • 71.04
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
8.96e3
  • 8.96e3
  • 9.60e3
  • 1.46e4
69.99
  • 69.99
  • 67.85
  • 51.26
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.06e3
  • 9.06e3
69.65
  • 69.65
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.08e3
  • 9.08e3
69.61
  • 69.61
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
9.39e3
  • 9.39e3
  • 2.14e4
68.57
  • 68.57
  • 28.37
AEIR
  • AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.67e3
  • 9.67e3
  • 9.67e3
  • 9.67e3
67.63
  • 67.63
  • 67.63
  • 67.63
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001782pigmented layer of retina
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.96e3
  • 9.96e3
  • 1.07e4
  • 1.07e4
  • 1.12e4
66.66
  • 66.66
  • 64.28
  • 64.28
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.15e4
  • 1.15e4
  • 1.16e4
62.48
  • 62.48
  • 61.53
  • 61.53
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.28e4
  • 1.28e4
  • 1.39e4
  • 1.42e4
57.12
  • 57.12
  • 53.31
  • 52.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003060pronephric duct
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
1.34e4
  • 1.34e4
  • 1.41e4
  • 1.42e4
54.97
  • 54.97
  • 52.75
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.40e4
  • 1.40e4
52.98
  • 52.98
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.55e4
  • 1.55e4
  • 1.75e4
48.07
  • 48.07
  • 41.42
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.88e4
  • 1.88e4
  • 1.93e4
37.07
  • 37.07
  • 35.26
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species19 genesCompare expression
Bilateria26 species26 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020143.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020143.

Cross-references

EnsemblENSDARG00000020143 (pah)
ZFINZDB-GENE-031006-2 (pah)
EMBLAY330224, BX510924, BX511171
Uniprot/SPTREMBLQ7SYH6, Q7SYH6_DANRE

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