D. rerio Gene: GCA - ENSDARG00000020187 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020187
NameGCA
Descriptionzgc:92027 [Source:ZFIN;Acc:ZDB-GENE-040930-3]
OrganismDanio rerio (zebrafish)
Synonym(s)gcl

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
594
  • 594
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
646
  • 646
  • 1.93e3
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
708
  • 708
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
752
  • 752
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.56e3
  • 1.56e3
  • 1.92e3
  • 2.14e3
  • 2.20e3
  • 2.30e3
  • 2.79e3
  • 3.23e3
  • 4.81e3
  • 5.53e3
  • 5.71e3
  • 5.75e3
  • 6.52e3
  • 6.57e3
  • 6.68e3
  • 9.25e3
  • 1.04e4
  • 1.39e4
  • 1.47e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.71e3
  • 1.71e3
  • 2.62e3
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
1.74e3
  • 1.74e3
  • 1.78e3
  • 1.78e3
  • 1.88e3
  • 2.10e3
  • 2.51e3
  • 2.60e3
  • 2.84e3
  • 2.86e3
  • 4.40e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.76e3
  • 1.76e3
  • 2.13e3
  • 2.98e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000104life cycle
1.94e3
  • 1.94e3
  • 3.53e3
  • 1.21e4
  • 1.29e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.02e3
  • 2.02e3
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.35e3
  • 2.35e3
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.42e3
  • 2.42e3
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.92e3
  • 2.92e3
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
3.00e3
  • 3.00e3
  • 4.33e3
  • 6.94e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.14e3
  • 3.14e3
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.95e3
  • 3.95e3
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.98e3
  • 3.98e3
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.03e3
  • 4.03e3
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.47e3
  • 4.47e3
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
4.57e3
  • 4.57e3
  • 4.88e3
  • 6.57e3
  • 6.81e3
  • 8.81e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.27e3
  • 5.27e3
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
  • 6.85e3
  • 7.16e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.30e4
  • 1.30e4
  • 1.37e4
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.31e4
  • 1.31e4
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX323042
EnsemblENSDARG00000020187 (GCA)
HGNCHGNC:15990 (GCA)
Uniprot/SPTREMBLF1QMK6, F1QMK6_DANRE
ZFINZDB-GENE-040930-3 (zgc:92027)

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