D. rerio Gene: sept9a - ENSDARG00000020235 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020235
Namesept9a
Descriptionseptin 9a [Source:ZFIN;Acc:ZDB-GENE-030131-9187]
OrganismDanio rerio (zebrafish)
Synonym(s)cb999, fb02h06, msf, sept9, wu:fb02h06
Orthologs(s)11 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
375
  • 375
98.75
  • 98.75
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
392
  • 392
98.69
  • 98.69
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000109gastrula stage
  • UBERON:0000104life cycle
471
  • 471
  • 2.98e3
  • 3.18e3
  • 3.54e3
  • 3.67e3
  • 3.74e3
  • 3.79e3
  • 3.87e3
  • 3.96e3
  • 4.55e3
  • 4.65e3
  • 4.70e3
  • 4.73e3
  • 8.38e3
  • 1.41e4
  • 1.44e4
  • 1.49e4
  • 1.50e4
98.43
  • 98.43
  • 90.03
  • 89.35
  • 88.16
  • 87.72
  • 87.47
  • 87.32
  • 87.06
  • 86.75
  • 84.77
  • 84.43
  • 84.27
  • 84.17
  • 71.93
  • 52.87
  • 51.82
  • 49.99
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
587
  • 587
  • 1.29e3
  • 1.55e3
  • 1.68e3
  • 2.65e3
98.04
  • 98.04
  • 95.68
  • 94.82
  • 94.38
  • 91.11
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
672
  • 672
  • 2.37e3
97.75
  • 97.75
  • 92.07
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
685
  • 685
97.71
  • 97.71
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.23e3
  • 1.23e3
  • 1.35e3
95.88
  • 95.88
  • 95.49
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.24e3
  • 1.24e3
95.87
  • 95.87
AEIR
  • AEIR
UBERON:0000925endoderm
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
1.66e3
  • 1.66e3
  • 1.66e3
  • 1.87e3
  • 1.87e3
  • 2.13e3
  • 2.13e3
  • 3.73e3
  • 4.98e3
  • 5.97e3
94.45
  • 94.45
  • 94.45
  • 93.75
  • 93.75
  • 92.86
  • 92.86
  • 87.50
  • 83.33
  • 80.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.86e3
  • 1.86e3
93.77
  • 93.77
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
1.92e3
  • 1.92e3
93.57
  • 93.57
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.99e3
  • 1.99e3
93.33
  • 93.33
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.66
  • 92.66
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
2.36e3
  • 2.36e3
92.09
  • 92.09
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.49e3
  • 2.49e3
91.68
  • 91.68
AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
2.49e3
  • 2.49e3
  • 2.72e3
  • 2.72e3
  • 2.72e3
  • 3.45e3
  • 3.45e3
91.67
  • 91.67
  • 90.91
  • 90.91
  • 90.91
  • 88.46
  • 88.46
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
2.66e3
  • 2.66e3
91.10
  • 91.10
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
2.86e3
  • 2.86e3
  • 3.49e3
  • 4.29e3
  • 4.77e3
  • 6.04e3
  • 6.14e3
90.41
  • 90.41
  • 88.30
  • 85.64
  • 84.03
  • 79.76
  • 79.45
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
2.96e3
  • 2.96e3
  • 3.53e3
  • 3.57e3
90.08
  • 90.08
  • 88.19
  • 88.05
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
2.99e3
  • 2.99e3
  • 2.99e3
  • 3.20e3
  • 8.79e3
90.00
  • 90.00
  • 90.00
  • 89.28
  • 70.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.06e3
  • 3.06e3
89.76
  • 89.76
AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
3.20e3
  • 3.20e3
  • 3.20e3
  • 3.20e3
  • 3.20e3
  • 3.45e3
  • 3.52e3
89.28
  • 89.28
  • 89.28
  • 89.28
  • 89.28
  • 88.46
  • 88.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
3.31e3
  • 3.31e3
  • 3.31e3
  • 3.67e3
  • 3.75e3
  • 3.98e3
  • 4.03e3
  • 4.26e3
  • 4.36e3
  • 5.21e3
  • 7.17e3
88.93
  • 88.93
  • 88.92
  • 87.73
  • 87.46
  • 86.69
  • 86.51
  • 85.72
  • 85.42
  • 82.56
  • 75.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003079floor plate
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000026Segmentation:14-19 somites
3.32e3
  • 3.32e3
  • 4.48e3
  • 4.98e3
  • 7.97e3
88.89
  • 88.89
  • 85.00
  • 83.33
  • 73.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.47e3
  • 3.47e3
88.37
  • 88.37
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.07
  • 88.07
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.62e3
  • 3.62e3
87.89
  • 87.89
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.92e3
  • 3.92e3
  • 1.04e4
86.87
  • 86.87
  • 65.32
AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
4.15e3
  • 4.15e3
  • 4.15e3
  • 4.15e3
  • 4.27e3
  • 4.39e3
  • 4.39e3
  • 4.39e3
  • 4.60e3
  • 4.60e3
86.11
  • 86.11
  • 86.11
  • 86.11
  • 85.71
  • 85.29
  • 85.29
  • 85.29
  • 84.61
  • 84.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
85.72
  • 85.72
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.82e3
  • 4.82e3
83.86
  • 83.86
AEIR
  • AEIR
UBERON:2000004anterior axial hypoblast
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.98e3
  • 4.98e3
  • 5.34e3
  • 5.34e3
  • 5.34e3
  • 5.34e3
  • 5.34e3
83.33
  • 83.33
  • 82.14
  • 82.14
  • 82.14
  • 82.14
  • 82.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.47e3
  • 5.47e3
81.68
  • 81.68
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.66e3
  • 5.66e3
  • 1.26e4
81.04
  • 81.04
  • 57.73
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
6.63e3
  • 6.63e3
77.79
  • 77.79
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.00e3
  • 7.00e3
76.57
  • 76.57
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.00e3
  • 7.00e3
76.56
  • 76.56
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
7.17e3
  • 7.17e3
75.98
  • 75.98
AEIR
  • AEIR
UBERON:0003058hypochord
  • ZFS:0000026Segmentation:14-19 somites
7.47e3
  • 7.47e3
74.99
  • 74.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.05e3
  • 8.05e3
73.05
  • 73.05
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.62e3
  • 8.62e3
71.12
  • 71.12
AEIR
  • AEIR
UBERON:0001637artery
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
8.71e3
  • 8.71e3
  • 8.71e3
  • 9.19e3
  • 1.09e4
  • 1.09e4
  • 1.34e4
  • 1.34e4
70.82
  • 70.82
  • 70.82
  • 69.22
  • 63.63
  • 63.63
  • 54.99
  • 54.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003055periderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
9.13e3
  • 9.13e3
  • 9.67e3
  • 9.96e3
  • 9.96e3
69.43
  • 69.43
  • 67.63
  • 66.65
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001638vein
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
9.19e3
  • 9.19e3
  • 9.19e3
  • 9.96e3
  • 1.12e4
  • 1.12e4
69.22
  • 69.22
  • 69.22
  • 66.65
  • 62.49
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
9.44e3
  • 9.44e3
68.40
  • 68.40
AEIR
  • AEIR
UBERON:0001003skin epidermis
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.67e3
  • 9.67e3
  • 1.03e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
  • 1.14e4
  • 1.23e4
67.63
  • 67.63
  • 65.61
  • 62.48
  • 62.48
  • 61.88
  • 61.75
  • 58.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.07e4
66.65
  • 66.65
  • 66.65
  • 66.65
  • 66.65
  • 64.27
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.03e4
  • 1.03e4
  • 1.03e4
  • 1.18e4
  • 1.18e4
65.61
  • 65.61
  • 65.61
  • 60.50
  • 60.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003895hypaxial myotome region
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.07e4
  • 1.07e4
  • 1.24e4
64.28
  • 64.28
  • 58.33
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.10e4
  • 1.10e4
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.14e4
63.14
  • 63.14
  • 63.14
  • 62.48
  • 62.48
  • 61.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000040median fin fold
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.16e4
  • 1.16e4
  • 1.31e4
61.10
  • 61.10
  • 56.24
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
  • 1.53e4
55.78
  • 55.78
  • 48.92
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.50e4
  • 1.50e4
49.94
  • 49.94
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

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