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D. rerio Gene: fermt2 - ENSDARG00000020242 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020242
Namefermt2
Descriptionfermitin family member 2 [Source:ZFIN;Acc:ZDB-GENE-050506-132]
OrganismDanio rerio (zebrafish)
Synonym(s)im:7145859, kind2, kindlin-2, plekhc1, q58ef4
Orthologs(s)31 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.89e3
  • 1.89e3
93.66
  • 93.66
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.33e3
  • 3.33e3
88.85
  • 88.85
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.58e3
  • 3.58e3
  • 5.56e3
88.01
  • 88.01
  • 81.40
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.72e3
  • 3.72e3
87.55
  • 87.55
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.12e3
  • 4.12e3
86.21
  • 86.21
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
4.18e3
  • 4.18e3
  • 6.56e3
  • 7.71e3
  • 1.05e4
  • 1.33e4
86.00
  • 86.00
  • 78.04
  • 74.20
  • 64.96
  • 55.58
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.39e3
  • 5.39e3
81.96
  • 81.96
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
5.59e3
  • 5.59e3
  • 6.24e3
81.27
  • 81.27
  • 79.10
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
6.43e3
  • 6.43e3
  • 9.47e3
78.46
  • 78.46
  • 68.28
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
7.87e3
  • 7.87e3
  • 1.89e4
73.67
  • 73.67
  • 36.77
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.40e3
  • 8.40e3
71.86
  • 71.86
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
8.83e3
  • 8.83e3
  • 9.34e3
  • 9.34e3
  • 1.05e4
  • 1.05e4
  • 1.08e4
  • 1.12e4
70.44
  • 70.44
  • 68.73
  • 68.73
  • 64.98
  • 64.98
  • 63.76
  • 62.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.12
  • 70.12
AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
8.96e3
  • 8.96e3
  • 9.19e3
  • 9.34e3
  • 9.51e3
  • 9.51e3
  • 9.56e3
  • 9.67e3
  • 9.96e3
  • 1.05e4
69.98
  • 69.98
  • 69.22
  • 68.74
  • 68.16
  • 68.16
  • 67.98
  • 67.63
  • 66.66
  • 64.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
9.19e3
  • 9.19e3
69.22
  • 69.22
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.77e3
  • 9.77e3
67.29
  • 67.29
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.89e3
  • 9.89e3
66.87
  • 66.87
AEIR
  • AEIR
UBERON:0005253head mesenchyme
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.20e4
  • 1.28e4
66.65
  • 66.65
  • 66.65
  • 66.65
  • 59.98
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.49
  • 66.49
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
1.01e4
  • 1.01e4
66.09
  • 66.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.94
  • 64.94
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.06e4
  • 1.06e4
  • 1.15e4
64.56
  • 64.56
  • 61.54
AEIR
  • AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.16e4
  • 1.16e4
  • 1.18e4
61.09
  • 61.09
  • 60.50
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.21e4
  • 1.21e4
59.62
  • 59.62
AEIR
  • AEIR
ZFA:0000023forerunner cell group (Danio)
  • ZFS:0000020Gastrula:75%-epiboly
1.21e4
  • 1.21e4
59.36
  • 59.36
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
55.99
  • 55.99
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.55e4
  • 1.55e4
48.24
  • 48.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.60e4
  • 1.60e4
46.51
  • 46.51
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.90e4
  • 1.90e4
36.33
  • 36.33
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species31 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020242.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Deuterostomia1 geneCompare expression
Bilateria3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020242.

Cross-references

EnsemblENSDARG00000020242 (fermt2)
ZFINZDB-GENE-050506-132 (fermt2)
EMBLAL928709, BC091937
Uniprot/SWISSPROTF1Q8X5, FERM2_DANRE

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