D. rerio Gene: pif1 - ENSDARG00000020289 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020289
Namepif1
DescriptionPIF1 5'-to-3' DNA helicase homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-030131-4928]
OrganismDanio rerio (zebrafish)
Synonym(s)cb934, fe11d03, pif1 homolog, wu:fe11d03, zgc:56161
Orthologs(s)25 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
57.0
  • 57.0
99.81
  • 99.81
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
169
  • 169
99.44
  • 99.44
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
370
  • 370
  • 1.61e3
  • 1.76e3
  • 2.67e3
  • 3.34e3
98.76
  • 98.76
  • 94.61
  • 94.12
  • 91.07
  • 88.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
381
  • 381
98.73
  • 98.73
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000109gastrula stage
844
  • 844
  • 8.02e3
  • 1.01e4
  • 1.03e4
  • 1.07e4
  • 1.09e4
  • 1.09e4
  • 1.11e4
  • 1.11e4
  • 1.11e4
  • 1.12e4
  • 1.13e4
  • 1.14e4
  • 1.35e4
  • 1.38e4
  • 1.47e4
  • 1.49e4
97.18
  • 97.18
  • 73.15
  • 66.27
  • 65.61
  • 64.04
  • 63.49
  • 63.38
  • 62.90
  • 62.87
  • 62.85
  • 62.51
  • 62.09
  • 61.84
  • 54.65
  • 53.74
  • 50.90
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.42e3
  • 1.42e3
95.24
  • 95.24
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.25e3
  • 2.25e3
92.47
  • 92.47
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.14e3
  • 3.14e3
89.51
  • 89.51
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.64e3
  • 3.64e3
87.81
  • 87.81
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.30e3
  • 4.30e3
85.62
  • 85.62
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.37e3
  • 4.37e3
85.38
  • 85.38
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
84.11
  • 84.11
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
4.78e3
  • 4.78e3
  • 4.91e3
  • 6.26e3
  • 6.91e3
  • 7.30e3
  • 8.28e3
83.99
  • 83.99
  • 83.58
  • 79.04
  • 76.85
  • 75.55
  • 72.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.37e3
  • 5.37e3
82.02
  • 82.02
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
5.57e3
  • 5.57e3
  • 7.11e3
81.35
  • 81.35
  • 76.20
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000029Pharyngula:Prim-5
6.89e3
  • 6.89e3
  • 8.54e3
  • 8.79e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 1.08e4
76.92
  • 76.92
  • 71.41
  • 70.57
  • 69.98
  • 69.43
  • 69.43
  • 63.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000098proliferative region
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.33e3
  • 9.96e3
  • 1.05e4
  • 1.05e4
  • 1.33e4
  • 1.33e4
  • 1.33e4
74.99
  • 74.99
  • 68.74
  • 66.66
  • 64.99
  • 64.99
  • 55.55
  • 55.55
  • 55.55
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.72e3
  • 7.72e3
74.14
  • 74.14
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.77e3
  • 7.77e3
74.00
  • 74.00
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
8.29e3
  • 8.29e3
  • 8.39e3
  • 8.92e3
  • 9.80e3
  • 9.93e3
  • 1.05e4
  • 1.10e4
  • 1.14e4
  • 1.44e4
  • 1.92e4
72.24
  • 72.24
  • 71.90
  • 70.14
  • 67.20
  • 66.75
  • 64.77
  • 63.25
  • 61.96
  • 51.86
  • 35.75
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
8.29e3
  • 8.29e3
72.23
  • 72.23
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
8.35e3
  • 8.35e3
72.03
  • 72.03
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
9.39e3
  • 9.39e3
68.56
  • 68.56
AEIR
  • AEIR
UBERON:0003053ventricular zone
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.03e4
  • 1.03e4
  • 1.12e4
65.37
  • 65.37
  • 62.49
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
1.09e4
  • 1.09e4
  • 1.10e4
  • 1.12e4
  • 1.17e4
63.63
  • 63.63
  • 63.32
  • 62.49
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
1.12e4
  • 1.12e4
  • 1.19e4
  • 1.19e4
62.49
  • 62.49
  • 59.99
  • 59.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.15e4
  • 1.15e4
61.42
  • 61.42
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.18e4
  • 1.18e4
  • 1.23e4
60.50
  • 60.50
  • 58.80
AEIR
  • AEIR
  • AEIR
UBERON:0007269pectoral appendage musculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
  • 1.21e4
59.36
  • 59.36
  • 59.36
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.26e4
  • 1.26e4
  • 1.26e4
57.87
  • 57.87
  • 57.87
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
  • 1.78e4
57.10
  • 57.10
  • 40.38
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
1.37e4
  • 1.37e4
  • 1.59e4
  • 1.82e4
54.01
  • 54.01
  • 46.82
  • 38.95
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.43e4
  • 1.43e4
  • 1.50e4
52.09
  • 52.09
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.44e4
  • 1.44e4
51.73
  • 51.73
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.14
  • 39.14
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.01e4
  • 2.01e4
32.78
  • 32.78
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.19e4
  • 2.19e4
26.66
  • 26.66
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
2.27e4
  • 2.27e4
23.97
  • 23.97
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria25 species25 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020289.

Cross-references

EnsemblENSDARG00000020289 (pif1)
ZFINZDB-GENE-030131-4928 (pif1)
EMBLBX296556
Uniprot/SPTREMBLA5PMA4, A5PMA4_DANRE

Do not show this banner again