D. rerio Gene: lmx1a - ENSDARG00000020354 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020354
Namelmx1a
DescriptionLIM homeobox transcription factor 1, alpha [Source:ZFIN;Acc:ZDB-GENE-041014-332]
OrganismDanio rerio (zebrafish)
Synonym(s)si:ch211-260g14.3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
990
  • 990
96.69
  • 96.69
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.79e3
  • 1.79e3
94.01
  • 94.01
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.08e3
  • 2.08e3
  • 4.96e3
  • 5.23e3
  • 8.85e3
  • 9.56e3
93.02
  • 93.02
  • 83.38
  • 82.48
  • 70.38
  • 67.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
2.74e3
  • 2.74e3
  • 1.09e4
  • 1.42e4
  • 1.43e4
  • 1.43e4
  • 1.43e4
  • 1.45e4
  • 1.49e4
  • 1.49e4
  • 1.51e4
  • 1.56e4
90.82
  • 90.82
  • 63.45
  • 52.45
  • 52.24
  • 52.18
  • 52.14
  • 51.54
  • 50.26
  • 50.25
  • 49.49
  • 47.64
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.06e3
  • 4.06e3
86.42
  • 86.42
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.40e3
  • 4.40e3
85.28
  • 85.28
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
80.84
  • 80.84
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.42e3
  • 6.42e3
78.52
  • 78.52
AEIR
  • AEIR
UBERON:0004684raphe nuclei
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
7.47e3
  • 7.47e3
  • 1.49e4
75.00
  • 75.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
9.75e3
  • 9.75e3
  • 1.17e4
  • 1.23e4
  • 1.23e4
  • 1.29e4
67.34
  • 67.34
  • 60.68
  • 58.84
  • 58.82
  • 56.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.53
  • 65.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.76
  • 64.76
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.65
  • 64.65
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.22e4
  • 1.22e4
  • 1.36e4
  • 1.63e4
  • 2.17e4
59.08
  • 59.08
  • 54.53
  • 45.32
  • 27.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.33e4
57.14
  • 57.14
  • 55.53
AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.28e4
  • 1.28e4
  • 1.34e4
57.14
  • 57.14
  • 54.97
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
56.32
  • 56.32
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.31e4
  • 1.31e4
56.21
  • 56.21
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.34e4
  • 1.34e4
55.03
  • 55.03
AEIR
  • AEIR
UBERON:0001894diencephalon
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
1.36e4
  • 1.36e4
  • 1.41e4
54.53
  • 54.53
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
1.40e4
  • 1.40e4
  • 1.42e4
  • 1.43e4
  • 1.52e4
  • 1.54e4
  • 1.56e4
  • 1.61e4
  • 1.87e4
  • 2.00e4
  • 2.31e4
53.08
  • 53.08
  • 52.54
  • 52.20
  • 49.21
  • 48.27
  • 47.87
  • 46.10
  • 37.39
  • 32.88
  • 22.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.41e4
  • 1.41e4
52.74
  • 52.74
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.46e4
  • 1.46e4
  • 1.60e4
51.05
  • 51.05
  • 46.47
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.49e4
  • 1.49e4
  • 1.49e4
50.09
  • 50.09
  • 50.05
AEIR
  • AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
1.67e4
  • 1.67e4
  • 1.79e4
44.07
  • 44.07
  • 40.04
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.01
  • 42.01
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.46
  • 40.46
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.86e4
  • 1.86e4
37.63
  • 37.63
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.89e4
  • 1.89e4
36.61
  • 36.61
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
1.90e4
  • 1.90e4
36.39
  • 36.39
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.39e4
  • 2.39e4
20.10
  • 20.10
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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