D. rerio Gene: nipsnap3a - ENSDARG00000020387 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020387
Namenipsnap3a
Descriptionnipsnap homolog 3A (C. elegans) [Source:ZFIN;Acc:ZDB-GENE-040426-1037]
OrganismDanio rerio (zebrafish)
Synonym(s)nipsnap3, zgc:56466
Orthologs(s)27 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
2.04e3
  • 2.04e3
  • 1.10e4
  • 1.12e4
  • 1.12e4
  • 1.12e4
  • 1.21e4
93.18
  • 93.18
  • 63.32
  • 62.49
  • 62.48
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.63e3
  • 3.63e3
  • 7.02e3
87.83
  • 87.83
  • 76.48
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.70
  • 87.70
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
4.00e3
  • 4.00e3
86.62
  • 86.62
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.55
  • 86.55
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.06e3
  • 4.06e3
86.41
  • 86.41
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000106zygote stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
4.97e3
  • 4.97e3
  • 8.63e3
  • 8.79e3
  • 8.91e3
  • 1.03e4
  • 1.10e4
  • 1.12e4
  • 1.21e4
  • 1.31e4
  • 1.33e4
  • 1.37e4
  • 1.40e4
  • 1.41e4
  • 1.49e4
  • 1.50e4
  • 1.50e4
83.35
  • 83.35
  • 71.10
  • 70.58
  • 70.15
  • 65.39
  • 63.26
  • 62.53
  • 59.53
  • 56.27
  • 55.43
  • 54.24
  • 53.05
  • 52.85
  • 50.25
  • 49.92
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.18e3
  • 5.18e3
  • 8.51e3
  • 8.63e3
82.67
  • 82.67
  • 71.52
  • 71.11
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
5.58e3
  • 5.58e3
  • 7.60e3
  • 7.90e3
  • 8.49e3
  • 8.91e3
81.32
  • 81.32
  • 74.55
  • 73.56
  • 71.58
  • 70.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.95e3
  • 5.95e3
80.09
  • 80.09
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
5.97e3
  • 5.97e3
80.01
  • 80.01
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
6.55e3
  • 6.55e3
  • 9.14e3
  • 9.30e3
  • 1.11e4
  • 1.14e4
  • 1.23e4
78.07
  • 78.07
  • 69.39
  • 68.87
  • 62.89
  • 61.69
  • 58.77
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.80e3
  • 6.80e3
77.23
  • 77.23
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.83e3
  • 6.83e3
77.13
  • 77.13
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
6.95e3
  • 6.95e3
76.73
  • 76.73
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.31e3
  • 7.31e3
75.52
  • 75.52
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
7.47e3
  • 7.47e3
74.98
  • 74.98
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
8.32e3
  • 8.32e3
72.13
  • 72.13
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
9.17e3
  • 9.17e3
  • 1.30e4
  • 1.36e4
  • 1.39e4
  • 1.39e4
  • 1.39e4
  • 1.60e4
  • 1.66e4
69.28
  • 69.28
  • 56.51
  • 54.33
  • 53.55
  • 53.53
  • 53.44
  • 46.28
  • 44.38
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
9.55e3
  • 9.55e3
68.02
  • 68.02
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.79e3
  • 9.79e3
67.22
  • 67.22
AEIR
  • AEIR
ZFA:0005738intestinal bulb primordium (Danio)
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
9.96e3
  • 9.96e3
  • 9.96e3
66.66
  • 66.66
  • 66.66
AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
  • 1.15e4
64.70
  • 64.70
  • 61.53
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.08e4
  • 1.08e4
63.71
  • 63.71
AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
1.09e4
  • 1.09e4
  • 1.16e4
63.63
  • 63.63
  • 61.10
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
1.14e4
  • 1.14e4
  • 1.20e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.27e4
61.88
  • 61.88
  • 59.98
  • 58.80
  • 58.31
  • 58.31
  • 57.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.30
  • 61.30
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.21
  • 61.21
AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.18e4
  • 1.18e4
  • 1.23e4
  • 1.25e4
  • 1.25e4
  • 1.35e4
  • 1.42e4
  • 1.42e4
60.50
  • 60.50
  • 58.80
  • 58.31
  • 58.31
  • 54.73
  • 52.60
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
1.20e4
  • 1.20e4
  • 1.21e4
59.98
  • 59.98
  • 59.44
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
  • 1.48e4
59.48
  • 59.48
  • 50.58
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
58.54
  • 58.54
AEIR
  • AEIR
UBERON:0001555digestive tract
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.29e4
  • 1.29e4
  • 1.38e4
  • 1.39e4
56.65
  • 56.65
  • 53.83
  • 53.55
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2001357alar plate midbrain
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.42e4
  • 1.42e4
54.97
  • 54.97
  • 52.60
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
  • 1.52e4
54.43
  • 54.43
  • 49.04
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000020387 (nipsnap3a)
ZFINZDB-GENE-040426-1037 (nipsnap3a)
EMBLCT009487
Uniprot/SPTREMBLF1QWR0, F1QWR0_DANRE

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