D. rerio Gene: snx5 - ENSDARG00000020442 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020442
Namesnx5
Descriptionsorting nexin 5 [Source:ZFIN;Acc:ZDB-GENE-040426-2857]
OrganismDanio rerio (zebrafish)
Synonym(s)id:ibd5091, wu:fa66c10, wu:fi28h04, zgc:55769
Orthologs(s)27 orthologs
Paralog(s)1 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.00e3
  • 1.00e3
96.65
  • 96.65
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.45e3
  • 1.45e3
95.15
  • 95.15
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.06
  • 95.06
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.91
  • 94.91
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.61e3
  • 1.61e3
  • 3.42e3
94.63
  • 94.63
  • 88.54
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.75e3
  • 1.75e3
94.14
  • 94.14
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.78e3
  • 1.78e3
94.06
  • 94.06
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.87e3
  • 1.87e3
93.74
  • 93.74
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.66
  • 92.66
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.58e3
  • 2.58e3
91.37
  • 91.37
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
2.70e3
  • 2.70e3
  • 3.38e3
  • 5.31e3
  • 5.46e3
  • 6.76e3
90.96
  • 90.96
  • 88.67
  • 82.24
  • 81.71
  • 77.37
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.93e3
  • 2.93e3
  • 4.25e3
  • 4.70e3
  • 4.79e3
  • 5.24e3
  • 5.27e3
  • 5.74e3
  • 6.53e3
  • 6.68e3
  • 8.17e3
90.18
  • 90.18
  • 85.78
  • 84.28
  • 83.95
  • 82.44
  • 82.35
  • 80.79
  • 78.15
  • 77.65
  • 72.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.17
  • 90.17
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.25e3
  • 3.25e3
  • 4.25e3
89.13
  • 89.13
  • 85.76
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
3.34e3
  • 3.34e3
88.82
  • 88.82
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.68e3
  • 3.68e3
87.67
  • 87.67
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.73e3
  • 3.73e3
87.53
  • 87.53
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.77e3
  • 3.77e3
  • 6.63e3
87.39
  • 87.39
  • 77.81
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
3.96e3
  • 3.96e3
  • 4.67e3
  • 5.70e3
  • 5.87e3
  • 6.14e3
  • 6.30e3
  • 6.44e3
  • 7.07e3
  • 7.49e3
  • 8.03e3
  • 8.03e3
  • 8.10e3
  • 8.28e3
  • 9.34e3
  • 1.38e4
  • 1.39e4
86.73
  • 86.73
  • 84.35
  • 80.92
  • 80.36
  • 79.46
  • 78.92
  • 78.43
  • 76.32
  • 74.92
  • 73.10
  • 73.10
  • 72.88
  • 72.29
  • 68.72
  • 53.74
  • 53.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
4.03e3
  • 4.03e3
  • 6.68e3
  • 7.28e3
  • 7.60e3
  • 9.20e3
  • 9.53e3
86.52
  • 86.52
  • 77.63
  • 75.62
  • 74.56
  • 69.21
  • 68.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
4.32e3
  • 4.32e3
85.54
  • 85.54
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
4.41e3
  • 4.41e3
  • 7.12e3
  • 8.18e3
  • 8.84e3
85.23
  • 85.23
  • 76.17
  • 72.62
  • 70.40
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.64e3
  • 4.64e3
84.46
  • 84.46
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
5.25e3
  • 5.25e3
  • 6.36e3
  • 6.91e3
82.41
  • 82.41
  • 78.70
  • 76.85
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.43e3
  • 5.43e3
81.81
  • 81.81
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.69e3
  • 5.69e3
  • 6.37e3
80.95
  • 80.95
  • 78.67
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.80e3
  • 5.80e3
80.60
  • 80.60
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.80e3
  • 5.80e3
80.58
  • 80.58
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.68e3
  • 6.68e3
77.63
  • 77.63
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
6.71e3
  • 6.71e3
77.55
  • 77.55
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.63e3
  • 7.63e3
74.45
  • 74.45
AEIR
  • AEIR
UBERON:0000178blood
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
1.07e4
  • 1.07e4
  • 1.24e4
  • 1.24e4
  • 1.28e4
  • 1.31e4
64.27
  • 64.27
  • 58.32
  • 58.32
  • 57.13
  • 56.23
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:2000083ventral mesoderm
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
1.23e4
  • 1.23e4
  • 1.49e4
  • 1.49e4
58.80
  • 58.80
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003061blood island
  • ZFS:0000029Pharyngula:Prim-5
1.24e4
  • 1.24e4
58.33
  • 58.33
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
  • 1.37e4
  • 1.50e4
54.53
  • 54.53
  • 54.15
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001637artery
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.37e4
  • 1.37e4
  • 1.37e4
  • 1.38e4
54.15
  • 54.15
  • 54.15
  • 53.83
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001638vein
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.38e4
  • 1.38e4
  • 1.38e4
  • 1.39e4
53.83
  • 53.83
  • 53.83
  • 53.31
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001945superior colliculus
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.41e4
  • 1.41e4
  • 1.41e4
52.75
  • 52.75
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0006965vascular cord
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0006596presumptive blood
  • ZFS:0000027Segmentation:20-25 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0009910posterior lateral plate mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:2001073axial vasculature
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
1.49e4
  • 1.49e4
  • 1.49e4
49.99
  • 49.99
  • 49.99
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species20 genesCompare expression
Bilateria25 species27 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020442.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression

Paralogy information comes from OMA : ENSDARG00000020442.

Cross-references

EnsemblENSDARG00000020442 (snx5)
ZFINZDB-GENE-040426-2857 (snx5)
EMBLBC075758, BX005372
Uniprot/SPTREMBLQ6DI32, Q6DI32_DANRE

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