D. rerio Gene: yipf3 - ENSDARG00000020449 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020449
Nameyipf3
DescriptionYip1 domain family, member 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6443]
OrganismDanio rerio (zebrafish)
Synonym(s)fj97f06, wu:fj97f06, zgc:55279

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreSources
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
2.45e3
  • 2.45e3
  • 2.68e3
  • 3.10e3
  • 3.12e3
  • 3.74e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.52e3
  • 2.52e3
  • 3.15e3
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
2.55e3
  • 2.55e3
  • 2.75e3
  • 2.78e3
  • 3.06e3
  • 3.32e3
  • 4.21e3
  • 4.42e3
  • 4.58e3
  • 5.00e3
  • 5.02e3
  • 5.06e3
  • 5.35e3
  • 5.44e3
  • 5.52e3
  • 1.42e4
  • 1.45e4
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.63e3
  • 2.63e3
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
3.18e3
  • 3.18e3
  • 3.28e3
  • 3.92e3
  • 3.97e3
  • 4.29e3
  • 4.44e3
  • 4.54e3
  • 4.74e3
  • 5.71e3
  • 6.47e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
3.33e3
  • 3.33e3
  • 4.61e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
3.45e3
  • 3.45e3
  • 7.38e3
  • 8.63e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
3.54e3
  • 3.54e3
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
3.57e3
  • 3.57e3
  • 4.02e3
  • 5.12e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.64e3
  • 3.64e3
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
3.66e3
  • 3.66e3
  • 4.66e3
  • 5.18e3
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.67e3
  • 3.67e3
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.70e3
  • 3.70e3
  • 3.82e3
AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
3.80e3
  • 3.80e3
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
4.26e3
  • 4.26e3
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
4.34e3
  • 4.34e3
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
4.44e3
  • 4.44e3
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.84e3
  • 4.84e3
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.12e3
  • 5.12e3
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
5.29e3
  • 5.29e3
  • 1.48e4
AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.46e3
  • 5.46e3
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.65e3
  • 5.65e3
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
5.83e3
  • 5.83e3
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.96e3
  • 5.96e3
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
6.34e3
  • 6.34e3
  • 6.34e3
  • 6.34e3
  • 6.58e3
  • 6.83e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.40e3
  • 7.89e3
  • 8.46e3
  • 8.46e3
  • 8.63e3
  • 8.71e3
  • 8.71e3
  • 8.88e3
  • 8.88e3
  • 9.05e3
  • 9.05e3
  • 9.05e3
  • 9.62e3
  • 9.87e3
  • 9.87e3
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
6.77e3
  • 6.77e3
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
  • 1.48e4
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation
Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.
Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBC044136, BC164802, CU019624
EnsemblENSDARG00000020449 (yipf3)
Uniprot/SPTREMBLB2GQM8, B2GQM8_DANRE
Uniprot/SWISSPROTQ803Z2, YIPF3_DANRE
ZFINZDB-GENE-030131-6443 (yipf3)

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