D. rerio Gene: safb - ENSDARG00000020467 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020467
Namesafb
Descriptionscaffold attachment factor B [Source:ZFIN;Acc:ZDB-GENE-030131-698]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb40a03, wu:fd42g06, zgc:55387
Orthologs(s)34 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0004734gastrula
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
442
  • 442
  • 461
  • 593
  • 621
  • 715
  • 862
98.52
  • 98.52
  • 98.46
  • 98.02
  • 97.92
  • 97.61
  • 97.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0000106zygote stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
468
  • 468
  • 543
  • 548
  • 638
  • 810
  • 1.26e3
  • 1.36e3
  • 1.40e3
  • 1.46e3
  • 1.63e3
  • 1.79e3
  • 1.97e3
  • 2.12e3
  • 2.45e3
  • 1.39e4
  • 1.39e4
  • 1.50e4
98.44
  • 98.44
  • 98.19
  • 98.17
  • 97.87
  • 97.29
  • 95.78
  • 95.44
  • 95.31
  • 95.11
  • 94.56
  • 93.99
  • 93.42
  • 92.90
  • 91.79
  • 53.44
  • 53.30
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000009Blastula:256-cell
548
  • 548
  • 964
  • 1.03e3
  • 2.98e3
  • 3.58e3
98.17
  • 98.17
  • 96.78
  • 96.55
  • 90.02
  • 88.01
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
701
  • 701
97.66
  • 97.66
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
730
  • 730
97.56
  • 97.56
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
746
  • 746
97.50
  • 97.50
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
770
  • 770
  • 813
  • 908
  • 950
  • 1.06e3
  • 1.25e3
  • 1.31e3
  • 1.35e3
  • 1.87e3
  • 2.23e3
97.42
  • 97.42
  • 97.28
  • 96.96
  • 96.82
  • 96.44
  • 95.83
  • 95.60
  • 95.47
  • 93.73
  • 92.53
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
774
  • 774
  • 1.86e3
97.41
  • 97.41
  • 93.78
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
789
  • 789
97.36
  • 97.36
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
872
  • 872
97.08
  • 97.08
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
898
  • 898
  • 1.15e3
  • 1.42e3
  • 1.60e3
97.00
  • 97.00
  • 96.17
  • 95.24
  • 94.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.06e3
  • 1.06e3
96.47
  • 96.47
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.21e3
  • 1.21e3
95.94
  • 95.94
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
1.22e3
  • 1.22e3
  • 1.25e3
95.90
  • 95.90
  • 95.82
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.25e3
  • 1.25e3
95.82
  • 95.82
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.31e3
  • 1.31e3
95.61
  • 95.61
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.45e3
  • 1.45e3
95.14
  • 95.14
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.49e3
  • 1.49e3
95.02
  • 95.02
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.52e3
  • 1.52e3
94.91
  • 94.91
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.55e3
  • 1.55e3
94.82
  • 94.82
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.64e3
  • 1.64e3
94.50
  • 94.50
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.65e3
  • 1.65e3
94.46
  • 94.46
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.75e3
  • 1.75e3
94.16
  • 94.16
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
1.79e3
  • 1.79e3
  • 2.38e3
  • 1.21e4
94.01
  • 94.01
  • 92.02
  • 59.59
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.83e3
  • 1.83e3
93.89
  • 93.89
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.91e3
  • 1.91e3
93.62
  • 93.62
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
1.95e3
  • 1.95e3
  • 2.11e3
  • 2.85e3
93.46
  • 93.46
  • 92.93
  • 90.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.19e3
  • 2.19e3
92.66
  • 92.66
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.49e3
  • 2.49e3
  • 3.22e3
91.66
  • 91.66
  • 89.23
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.56e3
  • 3.56e3
88.08
  • 88.08
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
3.78e3
  • 3.78e3
87.36
  • 87.36
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000018Gastrula:Germ-ring
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
4.27e3
  • 4.27e3
  • 4.27e3
  • 4.27e3
  • 4.60e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 4.98e3
  • 5.98e3
  • 6.22e3
  • 6.40e3
  • 6.97e3
  • 7.03e3
  • 7.03e3
  • 7.12e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.22e3
  • 8.30e3
85.71
  • 85.71
  • 85.71
  • 85.71
  • 84.61
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 83.33
  • 79.99
  • 79.16
  • 78.57
  • 76.66
  • 76.46
  • 76.46
  • 76.18
  • 74.99
  • 74.99
  • 74.99
  • 74.99
  • 73.32
  • 72.48
  • 72.22
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.74e3
  • 4.74e3
84.14
  • 84.14
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000020467 (safb)
ZFINZDB-GENE-030131-698 (safb)
EMBLBX323550, BX901933
Uniprot/SPTREMBLE7FFA2, E7FFA2_DANRE, Q1LV81, Q1LV81_DANRE

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