D. rerio Gene: arhgap17a - ENSDARG00000020488 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020488
Namearhgap17a
DescriptionRho GTPase activating protein 17a [Source:ZFIN;Acc:ZDB-GENE-050417-56]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:110306
Orthologs(s)15 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.82e3
  • 3.82e3
87.23
  • 87.23
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.86e3
  • 3.86e3
  • 5.43e3
87.09
  • 87.09
  • 81.82
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.33e3
  • 5.33e3
82.16
  • 82.16
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.38e3
  • 5.38e3
81.98
  • 81.98
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
6.34e3
  • 6.34e3
  • 9.80e3
78.78
  • 78.78
  • 67.17
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
6.54e3
  • 6.54e3
  • 7.12e3
  • 9.12e3
  • 9.19e3
  • 9.22e3
78.09
  • 78.09
  • 76.15
  • 69.46
  • 69.24
  • 69.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
6.94e3
  • 6.94e3
  • 9.68e3
  • 1.13e4
76.76
  • 76.76
  • 67.58
  • 62.25
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.98e3
  • 6.98e3
76.61
  • 76.61
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.27e3
  • 7.27e3
75.66
  • 75.66
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
7.37e3
  • 7.37e3
  • 1.34e4
  • 1.34e4
  • 1.37e4
75.32
  • 75.32
  • 54.97
  • 54.97
  • 54.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.45e3
  • 7.45e3
75.05
  • 75.05
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
7.48e3
  • 7.48e3
74.95
  • 74.95
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
7.94e3
  • 7.94e3
73.41
  • 73.41
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
7.98e3
  • 7.98e3
73.28
  • 73.28
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
8.60e3
  • 8.60e3
  • 9.64e3
  • 9.96e3
  • 1.01e4
  • 1.03e4
  • 1.05e4
  • 1.05e4
  • 1.07e4
  • 1.10e4
  • 1.10e4
  • 1.13e4
  • 1.14e4
  • 1.15e4
  • 1.16e4
  • 1.19e4
71.20
  • 71.20
  • 67.73
  • 66.65
  • 66.29
  • 65.58
  • 64.73
  • 64.69
  • 64.32
  • 63.33
  • 63.28
  • 62.22
  • 61.79
  • 61.47
  • 61.20
  • 60.29
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.80e3
  • 8.80e3
70.52
  • 70.52
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
8.85e3
  • 8.85e3
70.36
  • 70.36
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
9.13e3
  • 9.13e3
69.42
  • 69.42
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
9.50e3
  • 9.50e3
68.18
  • 68.18
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
9.52e3
  • 9.52e3
  • 9.92e3
  • 1.01e4
  • 1.01e4
  • 1.05e4
  • 1.06e4
  • 1.07e4
  • 1.07e4
  • 1.08e4
  • 1.41e4
68.14
  • 68.14
  • 66.78
  • 66.29
  • 66.25
  • 64.99
  • 64.55
  • 64.24
  • 64.18
  • 63.92
  • 52.74
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
9.59e3
  • 9.59e3
  • 1.09e4
  • 1.19e4
67.90
  • 67.90
  • 63.58
  • 60.28
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
9.70e3
  • 9.70e3
  • 1.49e4
67.52
  • 67.52
  • 50.06
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.90e3
  • 9.90e3
66.84
  • 66.84
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
9.97e3
  • 9.97e3
66.61
  • 66.61
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
1.06e4
  • 1.06e4
  • 1.09e4
  • 1.09e4
  • 1.11e4
  • 1.15e4
  • 1.16e4
64.41
  • 64.41
  • 63.48
  • 63.39
  • 62.69
  • 61.47
  • 61.04
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.11e4
  • 1.11e4
62.69
  • 62.69
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000032Pharyngula:High-pec
1.12e4
  • 1.12e4
  • 1.22e4
  • 1.29e4
  • 1.31e4
62.39
  • 62.39
  • 59.08
  • 56.93
  • 56.24
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.16e4
  • 1.16e4
61.09
  • 61.09
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.14
  • 58.14
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.33e4
  • 1.33e4
55.30
  • 55.30
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.37e4
  • 1.37e4
54.21
  • 54.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Cross-references

EnsemblENSDARG00000020488 (arhgap17a)
ZFINZDB-GENE-050417-56 (arhgap17a)
Uniprot/SPTREMBLF1R7M1, F1R7M1_DANRE

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