D. rerio Gene: ddx3a - ENSDARG00000020573 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020573
Nameddx3a
DescriptionDEAD (Asp-Glu-Ala-Asp) box helicase 3a [Source:ZFIN;Acc:ZDB-GENE-030131-1565]
OrganismDanio rerio (zebrafish)
Synonym(s)ddx3, fb74g09, wu:fb74g09, zgc:158804
Orthologs(s)35 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
455
  • 455
  • 967
  • 1.30e3
  • 1.30e3
  • 1.46e3
  • 1.55e3
  • 1.57e3
  • 1.61e3
  • 1.75e3
  • 1.88e3
  • 2.72e3
  • 3.04e3
  • 3.19e3
  • 3.70e3
  • 1.32e4
  • 1.44e4
  • 1.44e4
98.48
  • 98.48
  • 96.77
  • 95.65
  • 95.65
  • 95.11
  • 94.81
  • 94.74
  • 94.60
  • 94.15
  • 93.69
  • 90.88
  • 89.84
  • 89.31
  • 87.61
  • 55.92
  • 51.88
  • 51.82
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
578
  • 578
  • 1.54e3
  • 2.13e3
  • 2.65e3
98.07
  • 98.07
  • 94.86
  • 92.87
  • 91.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
724
  • 724
97.58
  • 97.58
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
772
  • 772
97.42
  • 97.42
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
811
  • 811
  • 1.23e3
  • 1.26e3
  • 1.30e3
  • 1.45e3
97.29
  • 97.29
  • 95.87
  • 95.77
  • 95.65
  • 95.16
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
868
  • 868
  • 2.33e3
97.10
  • 97.10
  • 92.20
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
887
  • 887
97.03
  • 97.03
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
894
  • 894
97.01
  • 97.01
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
998
  • 998
96.66
  • 96.66
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
999
  • 999
96.66
  • 96.66
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.08e3
  • 1.08e3
96.40
  • 96.40
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
1.10e3
  • 1.10e3
  • 2.05e3
96.33
  • 96.33
  • 93.13
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
1.10e3
  • 1.10e3
  • 2.04e3
  • 1.45e4
96.33
  • 96.33
  • 93.16
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
1.14e3
  • 1.14e3
  • 1.43e3
96.19
  • 96.19
  • 95.22
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.34e3
  • 1.34e3
95.51
  • 95.51
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
1.48e3
  • 1.48e3
95.06
  • 95.06
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.59e3
  • 1.59e3
  • 1.59e3
  • 2.13e3
  • 2.20e3
  • 2.30e3
  • 2.55e3
  • 2.56e3
  • 4.08e3
  • 4.50e3
  • 5.46e3
94.68
  • 94.68
  • 94.67
  • 92.88
  • 92.63
  • 92.29
  • 91.46
  • 91.43
  • 86.33
  • 84.93
  • 81.73
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
1.81e3
  • 1.81e3
  • 2.34e3
  • 3.34e3
93.95
  • 93.95
  • 92.18
  • 88.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.82e3
  • 1.82e3
93.91
  • 93.91
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.84e3
  • 1.84e3
  • 1.45e4
93.85
  • 93.85
  • 51.36
AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.98e3
  • 1.98e3
93.39
  • 93.39
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.00e3
  • 2.00e3
93.31
  • 93.31
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
2.09e3
  • 2.09e3
93.00
  • 93.00
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.27e3
  • 2.27e3
92.41
  • 92.41
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.34e3
  • 2.34e3
92.18
  • 92.18
AEIR
  • AEIR
UBERON:0004734gastrula
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000022Gastrula:Bud
2.45e3
  • 2.45e3
  • 2.51e3
  • 4.21e3
  • 4.34e3
  • 4.43e3
  • 5.38e3
91.82
  • 91.82
  • 91.59
  • 85.91
  • 85.47
  • 85.17
  • 81.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
2.55e3
  • 2.55e3
91.46
  • 91.46
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.94e3
  • 2.94e3
90.16
  • 90.16
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
3.43e3
  • 3.43e3
88.51
  • 88.51
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.63e3
  • 3.63e3
87.84
  • 87.84
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
3.65e3
  • 3.65e3
87.77
  • 87.77
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.97e3
  • 4.97e3
83.34
  • 83.34
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.50e4
55.16
  • 55.16
  • 49.94
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi19 species27 genesCompare expression
Bilateria26 species35 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020573.

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020573.

Cross-references

EnsemblENSDARG00000020573 (ddx3a)
ZFINZDB-GENE-030131-1565 (ddx3a)
EMBLBX545856
Uniprot/SPTREMBLA0A0H2UJY3, A0A0H2UJY3_DANRE, B0S6P6, B0S6P6_DANRE, B0S6P7, B0S6P7_DANRE

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