D. rerio Gene: atp2a1 - ENSDARG00000020574 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020574
Nameatp2a1
DescriptionATPase, Ca++ transporting, cardiac muscle, fast twitch 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
OrganismDanio rerio (zebrafish)
Synonym(s)acc, accordion, cb279, serca, serca1, wu:cegs655, wu:fb17h11, wu:fb19b10, zgc:92110
Orthologs(s)21 orthologs
Paralog(s)17 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000922embryo
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
13.0
  • 13.0
  • 33.3
  • 43.8
  • 50.0
  • 121
  • 180
  • 287
  • 2.22e3
  • 1.43e4
99.96
  • 99.96
  • 99.89
  • 99.86
  • 99.84
  • 99.60
  • 99.40
  • 99.04
  • 92.57
  • 51.97
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000028Segmentation:26+ somites
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000049segmentation
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
25.9
  • 25.9
  • 30.1
  • 60.4
  • 118
  • 153
  • 196
  • 238
  • 2.84e3
  • 7.62e3
  • 8.50e3
  • 1.24e4
  • 1.33e4
  • 1.49e4
  • 1.69e4
  • 1.70e4
99.92
  • 99.92
  • 99.90
  • 99.80
  • 99.61
  • 99.49
  • 99.35
  • 99.21
  • 90.48
  • 74.49
  • 71.52
  • 58.54
  • 55.49
  • 49.95
  • 43.50
  • 43.15
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
39.2
  • 39.2
  • 49.1
  • 109
99.87
  • 99.87
  • 99.84
  • 99.64
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
203
  • 203
  • 2.33e3
99.32
  • 99.32
  • 92.22
AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
244
  • 244
99.19
  • 99.19
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
312
  • 312
98.96
  • 98.96
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
363
  • 363
98.79
  • 98.79
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
543
  • 543
98.19
  • 98.19
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
730
  • 730
97.56
  • 97.56
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
947
  • 947
96.83
  • 96.83
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
96.51
  • 96.51
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.11e3
  • 1.11e3
96.28
  • 96.28
AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.66e3
  • 1.66e3
  • 2.13e3
  • 2.80e3
  • 9.51e3
  • 1.36e4
  • 1.49e4
  • 1.49e4
94.45
  • 94.45
  • 92.86
  • 90.62
  • 68.17
  • 54.53
  • 50.00
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000025Segmentation:10-13 somites
1.87e3
  • 1.87e3
  • 2.99e3
  • 5.98e3
  • 6.23e3
  • 7.22e3
  • 1.34e4
  • 1.66e4
93.75
  • 93.75
  • 90.00
  • 79.99
  • 79.15
  • 75.84
  • 54.97
  • 44.42
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000151pectoral fin
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
2.49e3
  • 2.49e3
  • 6.40e3
  • 7.47e3
91.67
  • 91.67
  • 78.57
  • 74.99
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
2.78e3
  • 2.78e3
  • 6.32e3
  • 1.21e4
90.68
  • 90.68
  • 78.83
  • 59.33
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
4.14e3
  • 4.14e3
  • 1.70e4
86.13
  • 86.13
  • 42.95
AEIR
  • AEIR
  • AEIR
UBERON:0005886post-hyoid pharyngeal arch skeleton
  • ZFS:0000037Larval:Day 5
6.40e3
  • 6.40e3
78.57
  • 78.57
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
6.98e3
  • 6.98e3
76.64
  • 76.64
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
8.13e3
  • 8.13e3
  • 1.75e4
  • 1.98e4
72.79
  • 72.79
  • 41.42
  • 33.55
AEIR
  • AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000026Segmentation:14-19 somites
8.40e3
  • 8.40e3
71.86
  • 71.86
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
9.57e3
  • 9.57e3
67.95
  • 67.95
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000025Segmentation:10-13 somites
1.07e4
  • 1.07e4
  • 1.12e4
  • 1.16e4
64.26
  • 64.26
  • 62.48
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.11
  • 63.11
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.44
  • 62.44
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.13e4
  • 1.13e4
62.19
  • 62.19
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.37e4
  • 1.37e4
54.25
  • 54.25
AEIR
  • AEIR
UBERON:0001042chordate pharynx
  • ZFS:0000031Pharyngula:Prim-25
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
UBERON:0001774skeletal muscle of trunk
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.53e4
  • 1.53e4
48.93
  • 48.93
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.59e4
  • 1.59e4
46.62
  • 46.62
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
40.10
  • 40.10
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.82e4
  • 1.82e4
39.12
  • 39.12
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria21 species21 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020574.

Paralogs (same species)

Cross-references

EnsemblENSDARG00000020574 (atp2a1)
ZFINZDB-GENE-020905-1 (atp2a1)
EMBLAB178533, AY737278, BC085636, FP016243
Uniprot/SPTREMBLE9QCD9, E9QCD9_DANRE, E9QF60, E9QF60_DANRE, E9QGF0, E9QGF0_DANRE, Q5U3A4, Q5U3A4_DANRE, Q642Z0, Q642Z0_DANRE

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