D. rerio Gene: txlnba - ENSDARG00000020594 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020594
Nametxlnba
Descriptiontaxilin beta a [Source:ZFIN;Acc:ZDB-GENE-030131-322]
OrganismDanio rerio (zebrafish)
Synonym(s)f1q5j1, fb22f07, si:dkey-34f16.1, wu:fb22f07
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
478
  • 478
98.40
  • 98.40
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
684
  • 684
97.71
  • 97.71
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
945
  • 945
  • 2.64e3
  • 1.20e4
  • 1.26e4
96.84
  • 96.84
  • 91.15
  • 59.98
  • 57.87
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.17e3
  • 1.17e3
96.10
  • 96.10
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
1.52e3
  • 1.52e3
  • 1.88e3
  • 3.17e3
  • 3.65e3
  • 4.27e3
94.90
  • 94.90
  • 93.72
  • 89.38
  • 87.80
  • 85.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
4.62e3
  • 4.62e3
  • 5.08e3
84.54
  • 84.54
  • 83.00
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.04e3
  • 5.04e3
  • 1.91e4
83.13
  • 83.13
  • 35.97
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.05e3
  • 8.05e3
73.06
  • 73.06
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
8.92e3
  • 8.92e3
70.14
  • 70.14
AEIR
  • AEIR
UBERON:0004291heart rudiment
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
8.96e3
  • 8.96e3
  • 9.19e3
  • 9.96e3
69.99
  • 69.99
  • 69.22
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
8.96e3
  • 8.96e3
  • 8.96e3
  • 9.96e3
  • 1.08e4
69.98
  • 69.98
  • 69.98
  • 66.64
  • 63.76
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000022Gastrula:Bud
9.96e3
  • 9.96e3
66.65
  • 66.65
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
9.96e3
  • 9.96e3
  • 1.02e4
  • 1.20e4
  • 1.25e4
66.65
  • 66.65
  • 65.77
  • 59.98
  • 58.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003084heart primordium
  • ZFS:0000026Segmentation:14-19 somites
1.05e4
  • 1.05e4
64.69
  • 64.69
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
1.06e4
  • 1.06e4
64.52
  • 64.52
AEIR
  • AEIR
UBERON:0004141heart tube
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
1.08e4
  • 1.08e4
  • 1.12e4
63.87
  • 63.87
  • 62.48
AEIR
  • AEIR
  • AEIR
ZFA:0000003adaxial cell (Danio)
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000024Segmentation:5-9 somites
1.08e4
  • 1.08e4
  • 1.14e4
  • 1.16e4
63.87
  • 63.87
  • 61.75
  • 61.09
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001015musculature
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
1.20e4
  • 1.20e4
  • 1.21e4
59.98
  • 59.98
  • 59.36
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.19
  • 58.19
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
48.23
  • 48.23
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.57e4
  • 1.57e4
47.42
  • 47.42
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.60e4
  • 1.60e4
46.56
  • 46.56
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.18e4
  • 2.18e4
26.98
  • 26.98
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020594.

Cross-references

EnsemblENSDARG00000020594 (txlnba)
ZFINZDB-GENE-030131-322 (txlnba)
EMBLBX248390
Uniprot/SPTREMBLQ5RIN3, Q5RIN3_DANRE, Q5RIN4, Q5RIN4_DANRE

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