D. rerio Gene: emc3 - ENSDARG00000020607 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020607
Nameemc3
DescriptionER membrane protein complex subunit 3 [Source:ZFIN;Acc:ZDB-GENE-040426-2904]
OrganismDanio rerio (zebrafish)
Synonym(s)loc55831, pob, q5ifi3, tmem111, wu:fi32f05, wu:fj63h08, zgc:63727

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.38e3
  • 1.38e3
95.39
  • 95.39
AEIR
  • AEIR
UBERON:0000966retina
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
1.87e3
  • 1.87e3
  • 1.89e3
  • 2.05e3
  • 2.37e3
93.73
  • 93.73
  • 93.66
  • 93.14
  • 92.08
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
2.34e3
  • 2.34e3
  • 2.95e3
  • 1.34e4
  • 1.49e4
92.18
  • 92.18
  • 90.12
  • 54.99
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
2.39e3
  • 2.39e3
92.01
  • 92.01
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.54e3
  • 2.54e3
91.49
  • 91.49
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
2.61e3
  • 2.61e3
91.28
  • 91.28
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
2.67e3
  • 2.67e3
91.06
  • 91.06
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
  • 3.49e3
90.27
  • 90.27
  • 88.30
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
2.99e3
  • 2.99e3
  • 4.79e3
  • 8.02e3
  • 1.12e4
  • 1.12e4
90.01
  • 90.01
  • 83.96
  • 73.14
  • 62.45
  • 62.43
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
2.99e3
  • 2.99e3
  • 3.06e3
  • 3.09e3
  • 3.15e3
  • 3.50e3
  • 3.55e3
  • 4.24e3
  • 4.98e3
  • 5.01e3
  • 5.32e3
89.99
  • 89.99
  • 89.77
  • 89.65
  • 89.45
  • 88.27
  • 88.13
  • 85.80
  • 83.33
  • 83.24
  • 82.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.27e3
  • 3.27e3
89.05
  • 89.05
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
3.33e3
  • 3.33e3
  • 4.03e3
  • 4.49e3
  • 4.65e3
  • 4.94e3
  • 5.04e3
88.85
  • 88.85
  • 86.51
  • 84.96
  • 84.42
  • 83.46
  • 83.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
3.39e3
  • 3.39e3
  • 4.31e3
88.64
  • 88.64
  • 85.56
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
3.52e3
  • 3.52e3
  • 4.12e3
  • 4.13e3
88.23
  • 88.23
  • 86.20
  • 86.16
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.18
  • 88.18
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
3.86e3
  • 3.86e3
87.09
  • 87.09
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.87e3
  • 3.87e3
87.04
  • 87.04
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.02e3
  • 4.02e3
86.53
  • 86.53
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
4.04e3
  • 4.04e3
86.47
  • 86.47
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.46e3
  • 4.46e3
85.06
  • 85.06
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.51e3
  • 4.51e3
84.89
  • 84.89
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000042Juvenile:Days 30-44
  • UBERON:0000106zygote stage
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
  • 5.27e3
  • 5.33e3
  • 5.45e3
  • 5.55e3
  • 5.63e3
  • 5.92e3
  • 5.94e3
  • 6.00e3
  • 6.23e3
  • 6.44e3
  • 6.45e3
  • 6.72e3
  • 7.62e3
  • 1.03e4
  • 1.12e4
  • 1.14e4
  • 1.40e4
  • 1.45e4
84.59
  • 84.59
  • 82.36
  • 82.16
  • 81.76
  • 81.42
  • 81.15
  • 80.18
  • 80.12
  • 79.90
  • 79.13
  • 78.44
  • 78.41
  • 77.49
  • 74.48
  • 65.61
  • 62.49
  • 61.75
  • 53.03
  • 51.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.53
  • 82.53
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.61e3
  • 5.61e3
81.22
  • 81.22
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.67e3
  • 5.67e3
81.00
  • 81.00
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
5.78e3
  • 5.78e3
  • 9.34e3
  • 1.12e4
  • 1.21e4
80.64
  • 80.64
  • 68.74
  • 62.48
  • 59.50
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
6.60e3
  • 6.60e3
77.90
  • 77.90
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
7.48e3
  • 7.48e3
74.94
  • 74.94
AEIR
  • AEIR
UBERON:2001076intestinal bulb
  • ZFS:0000037Larval:Day 5
8.96e3
  • 8.96e3
69.99
  • 69.99
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.03e4
  • 1.03e4
  • 1.50e4
65.62
  • 65.62
  • 49.92
AEIR
  • AEIR
  • AEIR
UBERON:2000088YSL
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
1.12e4
  • 1.12e4
  • 1.14e4
  • 1.14e4
62.48
  • 62.48
  • 61.75
  • 61.75
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0010312immature eye
  • ZFS:0000029Pharyngula:Prim-5
1.35e4
  • 1.35e4
54.73
  • 54.73
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAY398377, AY745978, BC055222
EnsemblENSDARG00000020607 (emc3)
Uniprot/SWISSPROTEMC3_DANRE, Q7SXW4
ZFINZDB-GENE-040426-2904 (emc3)

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