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D. rerio Gene: snap25a - ENSDARG00000020609 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020609
Namesnap25a
Descriptionsynaptosomal-associated protein, 25a [Source:ZFIN;Acc:ZDB-GENE-980526-468]
OrganismDanio rerio (zebrafish)
Synonym(s)etid17571.20, etid69167.20, fj42b02, fj45g04, fj48c02, o93578, q5tz65, q6p3l7, snap, snap,gn snap25.1, snap25, snap25.1, wu:fj42b02, wu:fj45g04, wu:fj48c02
Orthologs(s)28 orthologs
Paralog(s)3 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • ZFS:0000031Pharyngula:Prim-25
17.8
  • 17.8
  • 1.66e3
  • 2.77e3
99.94
  • 99.94
  • 94.44
  • 90.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
172
  • 172
  • 281
99.43
  • 99.43
  • 99.06
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000106zygote stage
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000026Segmentation:14-19 somites
278
  • 278
  • 586
  • 743
  • 906
  • 1.11e3
  • 1.98e3
  • 4.18e3
  • 1.21e4
  • 1.44e4
  • 1.45e4
  • 1.46e4
  • 1.50e4
  • 1.52e4
  • 1.53e4
99.07
  • 99.07
  • 98.04
  • 97.51
  • 96.97
  • 96.30
  • 93.38
  • 86.01
  • 59.50
  • 51.63
  • 51.56
  • 51.01
  • 49.92
  • 49.03
  • 48.81
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
392
  • 392
98.69
  • 98.69
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
398
  • 398
  • 845
  • 1.82e3
  • 2.49e3
  • 3.24e3
  • 3.25e3
  • 4.08e3
  • 1.23e4
98.67
  • 98.67
  • 97.18
  • 93.92
  • 91.66
  • 89.16
  • 89.14
  • 86.33
  • 58.89
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
570
  • 570
  • 739
  • 978
98.09
  • 98.09
  • 97.53
  • 96.73
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
  • UBERON:0000066fully formed stage
1.04e3
  • 1.04e3
  • 5.60e3
  • 8.93e3
  • 1.17e4
  • 1.20e4
  • 1.23e4
96.51
  • 96.51
  • 81.25
  • 70.09
  • 60.84
  • 59.98
  • 58.88
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
3.27e3
  • 3.27e3
89.04
  • 89.04
AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
4.27e3
  • 4.27e3
  • 8.96e3
  • 9.96e3
  • 1.07e4
  • 1.12e4
85.71
  • 85.71
  • 69.99
  • 66.66
  • 64.28
  • 62.49
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000010peripheral nervous system
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
4.98e3
  • 4.98e3
  • 5.97e3
83.34
  • 83.34
  • 80.00
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
81.37
  • 81.37
AEIR
  • AEIR
CL:0000540neuron
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000032Pharyngula:High-pec
5.97e3
  • 5.97e3
  • 6.54e3
  • 8.96e3
  • 9.96e3
  • 1.12e4
  • 1.12e4
  • 1.15e4
  • 1.21e4
  • 1.28e4
80.00
  • 80.00
  • 78.12
  • 69.99
  • 66.67
  • 62.48
  • 62.48
  • 61.34
  • 59.36
  • 57.13
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
6.08e3
  • 6.08e3
79.63
  • 79.63
AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
6.40e3
  • 6.40e3
  • 8.54e3
78.57
  • 78.57
  • 71.42
AEIR
  • AEIR
  • AEIR
UBERON:0001791inner nuclear layer of retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000033Hatching:Long-pec
6.64e3
  • 6.64e3
  • 9.96e3
  • 9.96e3
  • 1.22e4
  • 1.24e4
77.77
  • 77.77
  • 66.67
  • 66.67
  • 59.08
  • 58.32
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.15e3
  • 7.15e3
76.06
  • 76.06
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000031Pharyngula:Prim-25
7.91e3
  • 7.91e3
73.52
  • 73.52
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
8.08e3
  • 8.08e3
72.95
  • 72.95
AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
9.10e3
  • 9.10e3
  • 1.28e4
69.55
  • 69.55
  • 57.11
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
9.19e3
  • 9.19e3
69.23
  • 69.23
AEIR
  • AEIR
UBERON:0001714cranial ganglion
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000037Larval:Day 5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
9.34e3
  • 9.34e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.12e4
  • 1.17e4
  • 1.17e4
  • 1.17e4
68.74
  • 68.74
  • 66.66
  • 66.66
  • 66.65
  • 66.65
  • 62.49
  • 60.70
  • 60.70
  • 60.70
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002240spinal cord
  • ZFS:0000031Pharyngula:Prim-25
9.51e3
  • 9.51e3
68.16
  • 68.16
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.02e4
  • 1.02e4
65.92
  • 65.92
AEIR
  • AEIR
UBERON:0004128optic vesicle
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
1.05e4
  • 1.05e4
  • 1.05e4
  • 1.05e4
64.69
  • 64.69
  • 64.69
  • 64.69
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.10e4
  • 1.10e4
63.25
  • 63.25
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
1.14e4
  • 1.14e4
  • 1.27e4
  • 1.49e4
61.88
  • 61.88
  • 57.47
  • 49.97
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.81
  • 58.81
AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
1.24e4
  • 1.24e4
  • 1.50e4
58.46
  • 58.46
  • 49.89
AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.30e4
  • 1.30e4
  • 1.30e4
56.61
  • 56.61
  • 56.53
AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
  • 1.38e4
55.16
  • 55.16
  • 53.89
AEIR
  • AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
54.50
  • 54.50
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
1.38e4
  • 1.38e4
  • 1.56e4
53.93
  • 53.93
  • 47.73
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.43e4
  • 1.43e4
52.17
  • 52.17
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
1.52e4
  • 1.52e4
49.20
  • 49.20
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.64e4
  • 1.64e4
45.11
  • 45.11
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.71e4
  • 1.71e4
42.86
  • 42.86
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.74e4
  • 1.74e4
41.83
  • 41.83
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
41.52
  • 41.52
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species28 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020609.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Neopterygii1 geneCompare expression
Bilateria2 genesCompare expression
Eumetazoa3 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020609.

Cross-references

EnsemblENSDARG00000020609 (snap25a)
ZFINZDB-GENE-980526-468 (snap25a)
EMBLAF091593, BC063942, BX465184, BX470246
Uniprot/SPTREMBLU3JAS0, U3JAS0_DANRE
Uniprot/SWISSPROTQ5TZ66, SN25A_DANRE

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