D. rerio Gene: ap1b1 - ENSDARG00000020621 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020621
Nameap1b1
Descriptionadaptor-related protein complex 1, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-061025-1]
OrganismDanio rerio (zebrafish)
Synonym(s)fa11e04, si:ch211-149d1.1, skb, skylab, wu:fa11e04
Orthologs(s)24 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.04e3
  • 1.04e3
  • 1.77e3
  • 2.31e3
  • 2.39e3
96.53
  • 96.53
  • 94.07
  • 92.27
  • 91.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.81e3
  • 1.81e3
93.96
  • 93.96
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000037Larval:Day 5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000049segmentation
  • UBERON:0000068embryo stage
2.14e3
  • 2.14e3
  • 3.00e3
  • 3.08e3
  • 3.56e3
  • 3.66e3
  • 3.91e3
  • 3.99e3
  • 4.42e3
  • 4.73e3
  • 5.10e3
  • 6.36e3
  • 6.65e3
  • 6.87e3
  • 7.35e3
  • 8.56e3
  • 1.44e4
  • 1.49e4
  • 1.49e4
  • 1.50e4
92.85
  • 92.85
  • 89.94
  • 89.70
  • 88.10
  • 87.74
  • 86.91
  • 86.64
  • 85.20
  • 84.16
  • 82.92
  • 78.70
  • 77.73
  • 77.00
  • 75.38
  • 71.35
  • 51.88
  • 50.25
  • 49.95
  • 49.80
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.62e3
  • 2.62e3
  • 3.71e3
  • 3.90e3
  • 4.07e3
  • 4.20e3
  • 4.27e3
  • 4.42e3
  • 4.48e3
  • 4.49e3
  • 5.77e3
91.21
  • 91.21
  • 87.56
  • 86.94
  • 86.39
  • 85.94
  • 85.72
  • 85.22
  • 84.99
  • 84.98
  • 80.67
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
2.72e3
  • 2.72e3
  • 3.37e3
  • 3.40e3
  • 6.25e3
  • 6.76e3
90.90
  • 90.90
  • 88.73
  • 88.61
  • 79.08
  • 77.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.74e3
  • 2.74e3
90.82
  • 90.82
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
2.88e3
  • 2.88e3
  • 2.92e3
90.36
  • 90.36
  • 90.23
AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.97e3
  • 2.97e3
90.06
  • 90.06
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
3.06e3
  • 3.06e3
89.75
  • 89.75
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.26e3
  • 3.26e3
89.08
  • 89.08
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
3.28e3
  • 3.28e3
89.03
  • 89.03
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
3.41e3
  • 3.41e3
  • 4.04e3
88.60
  • 88.60
  • 86.46
AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.18
  • 88.18
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
3.68e3
  • 3.68e3
  • 3.75e3
  • 4.52e3
87.69
  • 87.69
  • 87.44
  • 84.86
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.74e3
  • 3.74e3
87.48
  • 87.48
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000104life cycle
3.83e3
  • 3.83e3
  • 3.85e3
  • 1.22e4
  • 1.34e4
  • 1.45e4
87.17
  • 87.17
  • 87.11
  • 59.08
  • 54.99
  • 51.33
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
3.89e3
  • 3.89e3
86.96
  • 86.96
AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.07e3
  • 4.07e3
86.38
  • 86.38
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
4.15e3
  • 4.15e3
86.11
  • 86.11
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.24e3
  • 4.24e3
85.81
  • 85.81
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
4.34e3
  • 4.34e3
85.46
  • 85.46
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.38e3
  • 4.38e3
85.35
  • 85.35
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
4.60e3
  • 4.60e3
84.59
  • 84.59
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
4.60e3
  • 4.60e3
84.59
  • 84.59
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
4.64e3
  • 4.64e3
84.45
  • 84.45
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
5.22e3
  • 5.22e3
82.51
  • 82.51
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.48e3
  • 5.48e3
81.66
  • 81.66
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
5.55e3
  • 5.55e3
  • 6.00e3
  • 7.23e3
  • 8.11e3
  • 8.50e3
  • 8.66e3
81.41
  • 81.41
  • 79.92
  • 75.80
  • 72.85
  • 71.55
  • 71.02
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.58e3
  • 5.58e3
81.33
  • 81.33
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
5.68e3
  • 5.68e3
80.97
  • 80.97
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
80.84
  • 80.84
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
1.24e4
  • 1.24e4
  • 1.29e4
  • 1.42e4
58.33
  • 58.33
  • 56.65
  • 52.57
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003051ear vesicle
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000029Pharyngula:Prim-5
1.34e4
  • 1.34e4
  • 1.35e4
54.97
  • 54.97
  • 54.96
AEIR
  • AEIR
  • AEIR
UBERON:2000168anterior macula
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000225lateral crista primordium
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000411posterior crista primordium
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2000468anterior crista primordium
  • ZFS:0000033Hatching:Long-pec
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi18 species18 genesCompare expression
Bilateria24 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020621.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Bilateria1 geneCompare expression
Opisthokonta2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020621.

Cross-references

EnsemblENSDARG00000020621 (ap1b1)
ZFINZDB-GENE-061025-1 (ap1b1)
EMBLBX664747
Uniprot/SPTREMBLA5PMS9, A5PMS9_DANRE, A5PMT0, A5PMT0_DANRE

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