D. rerio Gene: slc7a3a - ENSDARG00000020645 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020645
Nameslc7a3a
Descriptionsolute carrier family 7 (cationic amino acid transporter, y+ system), member 3a [Source:ZFIN;Acc:ZDB-GENE-041114-206]
OrganismDanio rerio (zebrafish)
Synonym(s)slc7a3, wu:fc11h09, zgc:92563
Orthologs(s)16 orthologs
Paralog(s)17 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
224
  • 224
99.25
  • 99.25
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000037Larval:Day 5
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000036Larval:Day 4
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000106zygote stage
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
1.58e3
  • 1.58e3
  • 1.69e3
  • 1.76e3
  • 1.86e3
  • 2.16e3
  • 2.45e3
  • 3.22e3
  • 3.67e3
  • 3.72e3
  • 3.94e3
  • 4.15e3
  • 4.84e3
  • 4.98e3
  • 5.07e3
  • 6.54e3
  • 6.64e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.79e3
  • 6.97e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.91e3
  • 8.25e3
  • 8.96e3
  • 8.96e3
  • 1.41e4
  • 1.44e4
  • 1.46e4
94.73
  • 94.73
  • 94.33
  • 94.10
  • 93.76
  • 92.78
  • 91.80
  • 89.23
  • 87.72
  • 87.56
  • 86.82
  • 86.12
  • 83.79
  • 83.33
  • 83.02
  • 78.12
  • 77.77
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 77.27
  • 76.66
  • 76.46
  • 74.99
  • 74.99
  • 73.52
  • 72.38
  • 69.99
  • 69.99
  • 52.86
  • 51.82
  • 51.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
1.86e3
  • 1.86e3
  • 2.12e3
  • 2.67e3
  • 3.27e3
  • 4.35e3
  • 4.92e3
93.76
  • 93.76
  • 92.91
  • 91.05
  • 89.06
  • 85.43
  • 83.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
2.03e3
  • 2.03e3
93.21
  • 93.21
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
2.22e3
  • 2.22e3
92.58
  • 92.58
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
2.23e3
  • 2.23e3
  • 2.24e3
  • 2.76e3
  • 3.42e3
92.52
  • 92.52
  • 92.51
  • 90.76
  • 88.57
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
2.32e3
  • 2.32e3
92.24
  • 92.24
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
2.48e3
  • 2.48e3
  • 5.42e3
  • 1.49e4
91.70
  • 91.70
  • 81.85
  • 49.94
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
2.80e3
  • 2.80e3
90.62
  • 90.62
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
3.42e3
  • 3.42e3
88.55
  • 88.55
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
3.51e3
  • 3.51e3
  • 4.33e3
  • 4.55e3
88.25
  • 88.25
  • 85.51
  • 84.78
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
3.56e3
  • 3.56e3
  • 4.13e3
  • 4.67e3
  • 4.77e3
  • 5.86e3
  • 6.28e3
  • 6.36e3
  • 6.62e3
  • 7.59e3
  • 8.88e3
88.09
  • 88.09
  • 86.18
  • 84.35
  • 84.04
  • 80.40
  • 78.98
  • 78.70
  • 77.85
  • 74.59
  • 70.26
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
3.77e3
  • 3.77e3
87.38
  • 87.38
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
3.77e3
  • 3.77e3
  • 3.85e3
87.38
  • 87.38
  • 87.10
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
4.03e3
  • 4.03e3
86.51
  • 86.51
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.05e3
  • 4.05e3
86.44
  • 86.44
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.43e3
  • 4.43e3
85.18
  • 85.18
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
4.88e3
  • 4.88e3
  • 8.74e3
  • 9.23e3
  • 1.37e4
  • 1.38e4
83.67
  • 83.67
  • 70.73
  • 69.09
  • 54.16
  • 53.85
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.97e3
  • 4.97e3
  • 9.00e3
83.37
  • 83.37
  • 69.85
AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
5.03e3
  • 5.03e3
83.15
  • 83.15
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
5.89e3
  • 5.89e3
80.27
  • 80.27
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
6.78e3
  • 6.78e3
77.31
  • 77.31
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
7.18e3
  • 7.18e3
75.95
  • 75.95
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.37e3
  • 7.37e3
75.34
  • 75.34
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
8.34e3
  • 8.34e3
72.08
  • 72.08
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
9.50e3
  • 9.50e3
68.19
  • 68.19
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.00e4
  • 1.00e4
66.43
  • 66.43
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.08e4
  • 1.08e4
63.88
  • 63.88
AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
1.19e4
  • 1.19e4
60.08
  • 60.08
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Euteleostomi1 geneCompare expression
Chordata4 genesCompare expression
Bilateria5 genesCompare expression
Opisthokonta17 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020645.

Cross-references

EnsemblENSDARG00000020645 (slc7a3a)
ZFINZDB-GENE-041114-206 (slc7a3a)
EMBLCR749164, CT025910
Uniprot/SPTREMBLF1R9X0, F1R9X0_DANRE

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