D. rerio Gene: zgc:153921 - ENSDARG00000020738 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020738
Namezgc:153921
Descriptionzgc:153921 [Source:ZFIN;Acc:ZDB-GENE-060929-816]
OrganismDanio rerio (zebrafish)
Synonym(s)wu:fb61g08, wu:fd58d10
Paralog(s)5 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002107liver
  • UBERON:0000066fully formed stage
328
  • 328
98.91
  • 98.91
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
973
  • 973
96.75
  • 96.75
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
4.36e3
  • 4.36e3
85.39
  • 85.39
AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
6.41e3
  • 6.41e3
78.54
  • 78.54
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
7.20e3
  • 7.20e3
75.91
  • 75.91
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.22e3
  • 7.22e3
75.82
  • 75.82
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.73
  • 59.73
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
1.31e4
  • 1.31e4
  • 1.75e4
  • 1.91e4
  • 2.14e4
55.97
  • 55.97
  • 41.41
  • 36.03
  • 28.36
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
1.70e4
  • 1.70e4
42.95
  • 42.95
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.71e4
  • 1.71e4
42.72
  • 42.72
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
1.80e4
  • 1.80e4
39.86
  • 39.86
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.86e4
  • 1.86e4
37.63
  • 37.63
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.97e4
  • 1.97e4
34.05
  • 34.05
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
2.10e4
  • 2.10e4
  • 2.19e4
29.52
  • 29.52
  • 26.67
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.33e4
  • 2.33e4
22.11
  • 22.11
AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.37e4
  • 2.37e4
20.78
  • 20.78
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • RNA-Seq data: Bgee
Sources of raw data:
  • RNA-Seq data: GEO

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Otophysi3 genesCompare expression
Clupeocephala5 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020738.

Cross-references

EnsemblENSDARG00000020738 (zgc:153921)
ZFINZDB-GENE-060929-816 (zgc:153921)
EMBLCU695221
Uniprot/SPTREMBLF1Q861, F1Q861_DANRE

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