D. rerio Gene: rac3b - ENSDARG00000020795 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020795
Namerac3b
Descriptionras-related C3 botulinum toxin substrate 3b (rho family, small GTP binding protein Rac3) [Source:ZFIN;Acc:ZDB-GENE-080220-21]
OrganismDanio rerio (zebrafish)
Synonym(s)zgc:175209
Paralog(s)100 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
1.12e3
  • 1.12e3
  • 6.44e3
96.25
  • 96.25
  • 78.45
AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0000104life cycle
  • UBERON:0000066fully formed stage
  • ZFS:0000019Gastrula:Shield
1.12e3
  • 1.12e3
  • 2.53e3
  • 4.63e3
  • 5.69e3
  • 6.31e3
  • 8.19e3
  • 8.53e3
  • 1.24e4
  • 1.29e4
  • 1.32e4
  • 1.50e4
  • 1.50e4
  • 1.61e4
96.25
  • 96.25
  • 91.52
  • 84.50
  • 80.95
  • 78.88
  • 72.58
  • 71.44
  • 58.58
  • 56.83
  • 55.75
  • 49.92
  • 49.81
  • 46.03
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.36e3
  • 1.36e3
  • 4.67e3
95.45
  • 95.45
  • 84.38
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.06e3
  • 2.06e3
  • 2.29e3
  • 3.64e3
93.12
  • 93.12
  • 92.34
  • 87.82
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
2.27e3
  • 2.27e3
  • 4.62e3
  • 7.15e3
  • 7.58e3
  • 8.44e3
  • 8.69e3
  • 9.51e3
  • 1.35e4
  • 1.45e4
  • 1.51e4
92.41
  • 92.41
  • 84.53
  • 76.05
  • 74.61
  • 71.73
  • 70.91
  • 68.15
  • 54.63
  • 51.48
  • 49.44
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
4.98e3
  • 4.98e3
83.33
  • 83.33
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.96e3
  • 5.96e3
  • 6.47e3
  • 9.35e3
  • 1.18e4
80.05
  • 80.05
  • 78.33
  • 68.68
  • 60.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
8.05e3
  • 8.05e3
73.04
  • 73.04
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
8.91e3
  • 8.91e3
70.16
  • 70.16
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
  • 9.36e3
70.07
  • 70.07
  • 68.66
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
9.08e3
  • 9.08e3
69.59
  • 69.59
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.14
  • 65.14
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.20e4
  • 1.20e4
59.88
  • 59.88
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.25e4
  • 1.25e4
58.17
  • 58.17
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
1.29e4
  • 1.29e4
  • 1.47e4
56.67
  • 56.67
  • 50.63
AEIR
  • AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.31e4
  • 1.31e4
56.20
  • 56.20
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.32e4
  • 1.32e4
55.81
  • 55.81
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.46
  • 47.46
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000011Blastula:1k-cell
1.58e4
  • 1.58e4
47.19
  • 47.19
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000109gastrula stage
  • ZFS:0000022Gastrula:Bud
1.59e4
  • 1.59e4
  • 1.75e4
  • 1.75e4
46.84
  • 46.84
  • 41.42
  • 41.34
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.65e4
  • 1.65e4
44.73
  • 44.73
AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.66e4
  • 1.66e4
44.48
  • 44.48
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.68e4
  • 1.68e4
43.61
  • 43.61
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
1.73e4
  • 1.73e4
42.02
  • 42.02
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.78e4
  • 1.78e4
40.40
  • 40.40
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.88e4
  • 1.88e4
37.21
  • 37.21
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
Sources of raw data:

Paralogs (same species)
Taxon nameGene(s)Expression comparisonSee details
Otophysi1 geneCompare expression
Neopterygii4 genesCompare expression
Deuterostomia5 genesCompare expression
Eukaryota100 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020795.

Cross-references

EnsemblENSDARG00000020795 (rac3b)
ZFINZDB-GENE-080220-21 (rac3b)
EMBLBC155847, BX548040
Uniprot/SPTREMBLA9JRY8, A9JRY8_DANRE

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