D. rerio Gene: tmod4 - ENSDARG00000020890 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020890
Nametmod4
Descriptiontropomodulin 4 (muscle) [Source:ZFIN;Acc:ZDB-GENE-991019-9]
OrganismDanio rerio (zebrafish)
Synonym(s)fa12b03, sk-tmod, skeletal tropomodulin, sktmod, wu:fa12b03

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
184
  • 184
99.38147
  • 99.38147
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
284
  • 284
99.04348
  • 99.04348
AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000036Larval:Day 4
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000066fully formed stage
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
680
  • 680
  • 1.56e3
  • 1.86e3
  • 1.89e3
  • 2.08e3
  • 3.08e3
  • 3.87e3
  • 4.23e3
  • 1.00e4
  • 1.04e4
  • 1.31e4
  • 1.31e4
  • 1.32e4
  • 1.35e4
  • 1.37e4
  • 1.39e4
  • 1.42e4
97.70341
  • 97.70341
  • 94.72122
  • 93.71944
  • 93.61500
  • 92.96033
  • 89.60916
  • 86.92664
  • 85.71477
  • 66.13699
  • 64.86754
  • 55.82985
  • 55.69469
  • 55.48318
  • 54.43191
  • 53.84306
  • 53.03314
  • 51.88136
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
807
  • 807
  • 1.24e3
  • 1.41e3
  • 1.75e3
  • 1.95e3
  • 2.00e3
  • 2.59e3
  • 6.17e3
  • 7.16e3
  • 8.99e3
97.27727
  • 97.27727
  • 95.80039
  • 95.23431
  • 94.09866
  • 93.40158
  • 93.23012
  • 91.23418
  • 79.13859
  • 75.79693
  • 69.61648
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
891
  • 891
96.99275
  • 96.99275
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.28e3
  • 1.28e3
  • 1.48e3
  • 2.39e3
95.67698
  • 95.67698
  • 94.99937
  • 91.90898
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
2.69e3
  • 2.69e3
  • 1.33e4
90.90126
  • 90.90126
  • 55.17445
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.91e3
  • 2.91e3
90.18407
  • 90.18407
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
3.53e3
  • 3.53e3
88.07564
  • 88.07564
AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.72e3
  • 3.72e3
87.44360
  • 87.44360
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000035Larval:Protruding-mouth
4.51e3
  • 4.51e3
  • 1.20e4
84.75608
  • 84.75608
  • 59.59010
AEIR
  • AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
5.01e3
  • 5.01e3
83.08688
  • 83.08688
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
6.90e3
  • 6.90e3
76.69883
  • 76.69883
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
7.03e3
  • 7.03e3
76.24592
  • 76.24592
AEIR
  • AEIR
UBERON:0002376cranial muscle
  • ZFS:0000035Larval:Protruding-mouth
7.40e3
  • 7.40e3
75.00167
  • 75.00167
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
8.03e3
  • 8.03e3
  • 1.20e4
72.86594
  • 72.86594
  • 59.59303
AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
8.94e3
  • 8.94e3
69.77341
  • 69.77341
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
9.18e3
  • 9.18e3
68.96123
  • 68.96123
AEIR
  • AEIR
UBERON:0003082myotome
  • ZFS:0000035Larval:Protruding-mouth
1.11e4
  • 1.11e4
62.49830
  • 62.49830
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
1.19e4
  • 1.19e4
  • 1.30e4
  • 1.31e4
  • 1.32e4
59.75002
  • 59.75002
  • 55.92926
  • 55.76652
  • 55.53022
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
1.21e4
  • 1.21e4
59.06143
  • 59.06143
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.27e4
  • 1.27e4
57.14366
  • 57.14366
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.28e4
  • 1.28e4
56.77379
  • 56.77379
AEIR
  • AEIR
UBERON:0008897fin
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
49.91381
  • 49.91381
AEIR
  • AEIR
UBERON:0001555digestive tract
  • UBERON:0000066fully formed stage
1.48e4
  • 1.48e4
49.89860
  • 49.89860
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
1.55e4
  • 1.55e4
47.52084
  • 47.52084
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.57e4
  • 1.57e4
47.09749
  • 47.09749
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLAF165216, BC065883, CT954330
EnsemblENSDARG00000020890 (tmod4)
Uniprot/SPTREMBLQ9PUQ6, Q9PUQ6_DANRE
ZFINZDB-GENE-991019-9 (tmod4)

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