D. rerio Gene: ddx56 - ENSDARG00000020913 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020913
Nameddx56
DescriptionDEAD (Asp-Glu-Ala-Asp) box helicase 56 [Source:ZFIN;Acc:ZDB-GENE-040825-3]
OrganismDanio rerio (zebrafish)
Synonym(s)noh61, zgc:110078
Orthologs(s)24 orthologs
Paralog(s)439 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.67e3
  • 1.67e3
94.40
  • 94.40
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
1.70e3
  • 1.70e3
  • 1.83e3
  • 1.95e3
  • 2.08e3
  • 2.21e3
  • 3.14e3
94.32
  • 94.32
  • 93.87
  • 93.46
  • 93.05
  • 92.60
  • 89.47
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
1.73e3
  • 1.73e3
94.21
  • 94.21
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
2.22e3
  • 2.22e3
  • 2.75e3
  • 2.83e3
  • 3.61e3
  • 3.76e3
  • 4.51e3
  • 7.87e3
  • 8.07e3
  • 9.03e3
  • 9.17e3
92.58
  • 92.58
  • 90.79
  • 90.51
  • 87.90
  • 87.42
  • 84.92
  • 73.65
  • 72.98
  • 69.77
  • 69.31
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
2.22e3
  • 2.22e3
  • 1.45e4
92.56
  • 92.56
  • 51.36
AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000015Blastula:Dome
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000016Blastula:30%-epiboly
2.49e3
  • 2.49e3
  • 2.49e3
  • 2.52e3
  • 2.88e3
  • 3.05e3
91.66
  • 91.66
  • 91.65
  • 91.57
  • 90.37
  • 89.79
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000027Segmentation:20-25 somites
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000008Blastula:128-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000036Larval:Day 4
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000015Blastula:Dome
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000016Blastula:30%-epiboly
  • UBERON:0000066fully formed stage
  • UBERON:0000068embryo stage
  • UBERON:0000104life cycle
  • ZFS:0000049segmentation
2.51e3
  • 2.51e3
  • 2.57e3
  • 2.62e3
  • 2.73e3
  • 2.78e3
  • 3.43e3
  • 5.60e3
  • 5.69e3
  • 5.76e3
  • 6.94e3
  • 7.07e3
  • 7.47e3
  • 7.47e3
  • 7.59e3
  • 7.91e3
  • 7.97e3
  • 8.10e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.15e3
  • 8.54e3
  • 8.71e3
  • 8.71e3
  • 8.79e3
  • 8.96e3
  • 9.82e3
  • 9.96e3
  • 9.96e3
  • 1.34e4
  • 1.37e4
  • 1.41e4
  • 1.49e4
91.59
  • 91.59
  • 91.38
  • 91.22
  • 90.88
  • 90.70
  • 88.52
  • 81.25
  • 80.95
  • 80.72
  • 76.75
  • 76.33
  • 74.99
  • 74.99
  • 74.59
  • 73.52
  • 73.32
  • 72.88
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 72.72
  • 71.39
  • 70.82
  • 70.82
  • 70.57
  • 70.00
  • 67.13
  • 66.65
  • 66.65
  • 55.05
  • 54.25
  • 52.86
  • 49.95
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
3.36e3
  • 3.36e3
88.77
  • 88.77
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
3.80e3
  • 3.80e3
87.26
  • 87.26
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.17e3
  • 4.17e3
86.04
  • 86.04
AEIR
  • AEIR
UBERON:0000948heart
  • ZFS:0000036Larval:Day 4
  • UBERON:0000066fully formed stage
4.38e3
  • 4.38e3
  • 7.75e3
85.33
  • 85.33
  • 74.07
AEIR
  • AEIR
  • AEIR
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
4.66e3
  • 4.66e3
84.41
  • 84.41
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
5.13e3
  • 5.13e3
82.83
  • 82.83
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
5.14e3
  • 5.14e3
82.79
  • 82.79
AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
5.28e3
  • 5.28e3
82.32
  • 82.32
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
5.30e3
  • 5.30e3
82.27
  • 82.27
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
5.56e3
  • 5.56e3
81.39
  • 81.39
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
5.66e3
  • 5.66e3
  • 7.70e3
  • 9.92e3
  • 1.06e4
81.05
  • 81.05
  • 74.22
  • 66.77
  • 64.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.96e3
  • 5.96e3
80.05
  • 80.05
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
6.10e3
  • 6.10e3
  • 9.73e3
79.58
  • 79.58
  • 67.41
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
6.24e3
  • 6.24e3
79.12
  • 79.12
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
7.48e3
  • 7.48e3
74.96
  • 74.96
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
7.72e3
  • 7.72e3
74.17
  • 74.17
AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
7.76e3
  • 7.76e3
  • 7.79e3
74.01
  • 74.01
  • 73.91
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.27
  • 73.27
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
8.01e3
  • 8.01e3
  • 8.05e3
  • 1.01e4
73.18
  • 73.18
  • 73.04
  • 66.23
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
8.13e3
  • 8.13e3
72.78
  • 72.78
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.31e3
  • 8.31e3
  • 1.04e4
72.17
  • 72.17
  • 65.30
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
8.49e3
  • 8.49e3
71.56
  • 71.56
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
8.78e3
  • 8.78e3
70.60
  • 70.60
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.03e3
  • 9.03e3
69.75
  • 69.75
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.04e3
  • 9.04e3
69.74
  • 69.74
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.03e4
  • 1.03e4
65.48
  • 65.48
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
1.19e4
  • 1.19e4
60.09
  • 60.09
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs

Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi16 species17 genesCompare expression
Bilateria23 species24 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020913.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Eukaryota439 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000020913.

Cross-references

EnsemblENSDARG00000020913 (ddx56)
ZFINZDB-GENE-040825-3 (ddx56)
EMBLAY648812, CR394525
Uniprot/SPTREMBLQ6DRE7, Q6DRE7_DANRE

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