D. rerio Gene: gmcl1 - ENSDARG00000020948 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000020948
Namegmcl1
Descriptiongerm cell-less, spermatogenesis associated 1 [Source:ZFIN;Acc:ZDB-GENE-030131-865]
OrganismDanio rerio (zebrafish)
Synonym(s)gcl, wu:fb51d08, zgc:77018
Orthologs(s)22 orthologs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0007010cleaving embryo
  • ZFS:0000005Cleavage:16-cell
702
  • 702
97.65
  • 97.65
AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000015Blastula:Dome
1.01e3
  • 1.01e3
  • 1.14e3
  • 2.75e3
  • 3.15e3
  • 5.09e3
96.61
  • 96.61
  • 96.17
  • 90.78
  • 89.45
  • 82.96
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • UBERON:0000106zygote stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000040Larval:Days 14-20
  • UBERON:0000066fully formed stage
  • UBERON:0000104life cycle
  • UBERON:0000068embryo stage
1.29e3
  • 1.29e3
  • 5.03e3
  • 5.14e3
  • 5.86e3
  • 5.98e3
  • 6.25e3
  • 6.67e3
  • 7.00e3
  • 7.41e3
  • 7.65e3
  • 7.67e3
  • 7.95e3
  • 8.95e3
  • 9.00e3
  • 1.43e4
  • 1.47e4
  • 1.48e4
95.68
  • 95.68
  • 83.16
  • 82.78
  • 80.38
  • 79.97
  • 79.06
  • 77.65
  • 76.57
  • 75.19
  • 74.40
  • 74.32
  • 73.37
  • 70.02
  • 69.88
  • 51.99
  • 50.90
  • 50.61
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
2.26e3
  • 2.26e3
92.43
  • 92.43
AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
3.43e3
  • 3.43e3
88.51
  • 88.51
AEIR
  • AEIR
UBERON:0006860swim bladder
  • UBERON:0000066fully formed stage
3.52e3
  • 3.52e3
88.21
  • 88.21
AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000037Larval:Day 5
3.86e3
  • 3.86e3
  • 4.10e3
  • 5.52e3
  • 9.34e3
87.06
  • 87.06
  • 86.27
  • 81.52
  • 68.72
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
4.25e3
  • 4.25e3
  • 6.44e3
  • 6.81e3
  • 6.90e3
  • 6.96e3
  • 7.20e3
  • 7.29e3
  • 7.58e3
  • 7.96e3
  • 8.20e3
85.77
  • 85.77
  • 78.43
  • 77.21
  • 76.88
  • 76.69
  • 75.90
  • 75.58
  • 74.61
  • 73.36
  • 72.56
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002415tail
  • UBERON:0000066fully formed stage
4.32e3
  • 4.32e3
85.55
  • 85.55
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • UBERON:0000109gastrula stage
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.47e3
  • 4.47e3
  • 4.67e3
  • 4.78e3
  • 4.99e3
  • 5.25e3
  • 7.12e3
85.03
  • 85.03
  • 84.38
  • 83.99
  • 83.30
  • 82.43
  • 76.17
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
4.56e3
  • 4.56e3
84.72
  • 84.72
AEIR
  • AEIR
UBERON:0002113kidney
  • UBERON:0000066fully formed stage
4.59e3
  • 4.59e3
84.65
  • 84.65
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
4.66e3
  • 4.66e3
84.41
  • 84.41
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000008Blastula:128-cell
  • UBERON:00072322 cell stage
  • UBERON:00072334 cell stage
  • UBERON:00072368 cell stage
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000017Gastrula:50%-epiboly
  • UBERON:0000106zygote stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000005Cleavage:16-cell
  • ZFS:0000006Cleavage:32-cell
  • ZFS:0000007Cleavage:64-cell
  • ZFS:0000009Blastula:256-cell
  • ZFS:0000010Blastula:512-cell
  • ZFS:0000011Blastula:1k-cell
  • ZFS:0000012Blastula:High
  • ZFS:0000013Blastula:Oblong
  • ZFS:0000015Blastula:Dome
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
4.98e3
  • 4.98e3
  • 6.40e3
  • 6.40e3
  • 6.40e3
  • 6.64e3
  • 6.89e3
  • 7.03e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.53e3
  • 8.54e3
  • 8.71e3
  • 8.79e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.71e3
  • 9.96e3
  • 9.96e3
83.33
  • 83.33
  • 78.57
  • 78.57
  • 78.57
  • 77.77
  • 76.92
  • 76.46
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 75.00
  • 73.32
  • 71.43
  • 71.41
  • 70.82
  • 70.57
  • 69.99
  • 69.98
  • 69.43
  • 69.43
  • 69.43
  • 67.48
  • 66.66
  • 66.65
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:4000164caudal fin
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
5.21e3
  • 5.21e3
  • 7.68e3
82.56
  • 82.56
  • 74.30
AEIR
  • AEIR
  • AEIR
UBERON:0002329somite
  • ZFS:0000025Segmentation:10-13 somites
5.66e3
  • 5.66e3
81.06
  • 81.06
AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
5.71e3
  • 5.71e3
  • 6.21e3
80.88
  • 80.88
  • 79.21
AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
5.72e3
  • 5.72e3
  • 1.37e4
80.84
  • 80.84
  • 54.13
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
5.88e3
  • 5.88e3
80.30
  • 80.30
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
6.28e3
  • 6.28e3
78.97
  • 78.97
AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
6.51e3
  • 6.51e3
  • 6.79e3
  • 7.63e3
78.21
  • 78.21
  • 77.26
  • 74.47
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
6.93e3
  • 6.93e3
76.79
  • 76.79
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
6.96e3
  • 6.96e3
76.70
  • 76.70
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
7.43e3
  • 7.43e3
75.13
  • 75.13
AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.54e3
  • 7.54e3
74.77
  • 74.77
AEIR
  • AEIR
CL:0000094granulocyte
  • UBERON:0000066fully formed stage
7.58e3
  • 7.58e3
74.62
  • 74.62
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
7.79e3
  • 7.79e3
73.92
  • 73.92
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
  • ZFS:0000036Larval:Day 4
8.17e3
  • 8.17e3
  • 1.10e4
72.66
  • 72.66
  • 63.16
AEIR
  • AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
8.66e3
  • 8.66e3
71.00
  • 71.00
AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.17e3
  • 9.17e3
69.30
  • 69.30
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
9.43e3
  • 9.43e3
68.42
  • 68.42
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
9.62e3
  • 9.62e3
67.79
  • 67.79
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.04e4
  • 1.04e4
65.18
  • 65.18
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.05e4
  • 1.05e4
64.98
  • 64.98
AEIR
  • AEIR
UBERON:0001630muscle organ
  • UBERON:0000066fully formed stage
1.12e4
  • 1.12e4
62.59
  • 62.59
AEIR
  • AEIR
ZFA:0000093blastomere (Danio)
  • UBERON:00072334 cell stage
  • UBERON:00072322 cell stage
1.12e4
  • 1.12e4
  • 1.49e4
62.50
  • 62.50
  • 50.00
AEIR
  • AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores
 important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Orthologs
Taxon nameSpecies with orthologsGene(s)Expression comparisonSee details
Euteleostomi15 species15 genesCompare expression
Bilateria22 species22 genesCompare expression

Orthology information comes from OMA : ENSDARG00000020948.

Cross-references

EnsemblENSDARG00000020948 (gmcl1)
ZFINZDB-GENE-030131-865 (gmcl1)
EMBLBC066504, CABZ01111432, CABZ01111433, CABZ01111434, CABZ01111435
Uniprot/SPTREMBLQ6NYQ2, Q6NYQ2_DANRE

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