D. rerio Gene: rtn1b - ENSDARG00000021143 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021143
Namertn1b
Descriptionreticulon 1b [Source:ZFIN;Acc:ZDB-GENE-030710-3]
OrganismDanio rerio (zebrafish)
Synonym(s)rtn1, rtn1l, wu:fa21b09, wu:fj35h01

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000955brain
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000104life cycle
250
  • 250
  • 4.77e3
  • 1.36e4
99.15807
  • 99.15807
  • 83.88835
  • 54.11428
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
478
  • 478
  • 806
98.38664
  • 98.38664
  • 97.27916
AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000066fully formed stage
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000032Pharyngula:High-pec
707
  • 707
  • 1.20e3
  • 4.93e3
  • 1.04e4
97.61427
  • 97.61427
  • 95.93951
  • 83.34419
  • 64.97970
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000037Larval:Day 5
  • ZFS:0000036Larval:Day 4
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000040Larval:Days 14-20
  • ZFS:0000042Juvenile:Days 30-44
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • UBERON:0000068embryo stage
  • UBERON:0000066fully formed stage
  • ZFS:0000026Segmentation:14-19 somites
765
  • 765
  • 1.24e3
  • 1.52e3
  • 2.04e3
  • 3.06e3
  • 4.05e3
  • 6.49e3
  • 1.13e4
  • 1.16e4
  • 1.19e4
  • 1.29e4
  • 1.40e4
  • 1.43e4
  • 1.45e4
97.41659
  • 97.41659
  • 95.80205
  • 94.85576
  • 93.09527
  • 89.66911
  • 86.32801
  • 78.07325
  • 61.81669
  • 60.96083
  • 59.73515
  • 56.53653
  • 52.62823
  • 51.55493
  • 51.00338
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000068embryo stage
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0004707pharyngula stage
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000025Segmentation:10-13 somites
797
  • 797
  • 1.07e3
  • 1.36e3
  • 4.05e3
  • 4.89e3
  • 5.78e3
  • 6.23e3
  • 1.57e4
  • 1.77e4
97.30847
  • 97.30847
  • 96.38097
  • 95.41808
  • 86.30794
  • 83.46854
  • 80.47034
  • 78.93296
  • 46.84245
  • 40.27188
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000069larval stage
920
  • 920
  • 1.08e3
  • 1.18e3
96.89321
  • 96.89321
  • 96.34124
  • 96.00101
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002481bone tissue
  • UBERON:0000066fully formed stage
965
  • 965
96.74176
  • 96.74176
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
2.18e3
  • 2.18e3
92.63343
  • 92.63343
AEIR
  • AEIR
UBERON:0000473testis
  • UBERON:0000066fully formed stage
5.13e3
  • 5.13e3
82.65431
  • 82.65431
AEIR
  • AEIR
UBERON:4000164caudal fin
  • UBERON:0000066fully formed stage
  • ZFS:0000033Hatching:Long-pec
5.27e3
  • 5.27e3
  • 6.30e3
82.20526
  • 82.20526
  • 78.70817
AEIR
  • AEIR
  • AEIR
UBERON:0001792ganglionic layer of retina
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000032Pharyngula:High-pec
7.89e3
  • 7.89e3
  • 9.87e3
73.32320
  • 73.32320
  • 66.65652
AEIR
  • AEIR
  • AEIR
UBERON:0002199integument
  • UBERON:0000066fully formed stage
7.98e3
  • 7.98e3
73.02874
  • 73.02874
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
8.00e3
  • 8.00e3
72.96186
  • 72.96186
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
  • UBERON:0000109gastrula stage
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.64e3
  • 8.64e3
  • 1.02e4
  • 1.13e4
  • 1.19e4
  • 1.37e4
70.80912
  • 70.80912
  • 65.61601
  • 61.80015
  • 59.63835
  • 53.81127
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0001017central nervous system
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
9.11e3
  • 9.11e3
  • 9.51e3
  • 9.51e3
  • 9.87e3
  • 1.17e4
  • 1.22e4
  • 1.22e4
69.22062
  • 69.22062
  • 67.84530
  • 67.84530
  • 66.65314
  • 60.50435
  • 58.80324
  • 58.80324
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002082cardiac ventricle
  • UBERON:0000066fully formed stage
9.71e3
  • 9.71e3
67.18966
  • 67.18966
AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
1.01e4
  • 1.01e4
65.72288
  • 65.72288
AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
1.06e4
  • 1.06e4
64.27651
  • 64.27651
AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
61.97928
  • 61.97928
AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
1.13e4
  • 1.13e4
  • 1.18e4
  • 1.22e4
  • 1.23e4
  • 1.23e4
  • 1.23e4
  • 1.38e4
61.88109
  • 61.88109
  • 59.97634
  • 58.80324
  • 58.31136
  • 58.31136
  • 58.31136
  • 53.31307
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000307blastula
  • ZFS:0000016Blastula:30%-epiboly
1.18e4
  • 1.18e4
60.10650
  • 60.10650
AEIR
  • AEIR
UBERON:0007132head kidney
  • UBERON:0000066fully formed stage
1.23e4
  • 1.23e4
58.38981
  • 58.38981
AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.27e4
  • 1.27e4
57.14193
  • 57.14193
AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
56.95334
  • 56.95334
AEIR
  • AEIR
UBERON:0002106spleen
  • UBERON:0000066fully formed stage
1.27e4
  • 1.27e4
56.94320
  • 56.94320
AEIR
  • AEIR
UBERON:0002385muscle tissue
  • UBERON:0000066fully formed stage
1.34e4
  • 1.34e4
54.62120
  • 54.62120
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
1.47e4
  • 1.47e4
50.36463
  • 50.36463
AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.61e4
  • 1.61e4
45.54307
  • 45.54307
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.71e4
  • 1.71e4
42.29801
  • 42.29801
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

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