D. rerio Gene: valopa - ENSDARG00000021150 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021150
Namevalopa
Descriptionvertebrate ancient long opsin a [Source:ZFIN;Acc:ZDB-GENE-000427-4]
OrganismDanio rerio (zebrafish)
Synonym(s)(va)-opsin, (val)-opsin, va-opsin, va1, val-opsin, valop, valopgn
Orthologs(s)3 orthologs
Paralog(s)2 paralogs

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0002240spinal cord
  • ZFS:0000029Pharyngula:Prim-5
1.28e4
  • 1.28e4
57.11
  • 57.11
AEIR
  • AEIR
UBERON:0001891midbrain
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.34e4
  • 1.34e4
  • 1.49e4
54.99
  • 54.99
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0002028hindbrain
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.34e4
  • 1.34e4
  • 1.39e4
  • 1.49e4
54.97
  • 54.97
  • 53.55
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000035Larval:Protruding-mouth
  • UBERON:0000066fully formed stage
1.36e4
  • 1.36e4
  • 1.54e4
54.53
  • 54.53
  • 48.41
AEIR
  • AEIR
  • AEIR
UBERON:0001769iris
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000992female gonad
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
45.55
  • 45.55
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.63e4
  • 1.63e4
  • 2.26e4
45.45
  • 45.45
  • 24.40
AEIR
  • AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.92e4
  • 1.92e4
35.65
  • 35.65
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
1.96e4
  • 1.96e4
  • 2.16e4
  • 2.36e4
34.30
  • 34.30
  • 27.77
  • 20.98
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
2.23e4
  • 2.23e4
  • 2.48e4
25.46
  • 25.46
  • 16.98
AEIR
  • AEIR
  • AEIR
UBERON:0000014zone of skin
  • UBERON:0000066fully formed stage
2.26e4
  • 2.26e4
24.32
  • 24.32
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Orthologs

Orthology information comes from OMA : ENSDARG00000021150.

Paralogs (same species)

Taxon nameGene(s)Expression comparisonSee details
Clupeocephala1 geneCompare expression
Chordata2 genesCompare expression

Paralogy information comes from OMA : ENSDARG00000021150.

Cross-references

EnsemblENSDARG00000021150 (valopa)
ZFINZDB-GENE-000427-4 (valopa)
EMBLAB035276, BC128815, CU856157, CU915281
Uniprot/SPTREMBLQ9IB88, Q9IB88_DANRE

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