D. rerio Gene: noto - ENSDARG00000021201 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021201
Namenoto
Descriptionnotochord homeobox [Source:ZFIN;Acc:ZDB-GENE-990415-75]
OrganismDanio rerio (zebrafish)
Synonym(s)flh, floating head, znot

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000307blastula
  • ZFS:0000015Blastula:Dome
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000011Blastula:1k-cell
950
  • 950
  • 2.36e3
  • 1.83e4
96.82
  • 96.82
  • 92.10
  • 38.70
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • UBERON:0000109gastrula stage
1.47e3
  • 1.47e3
  • 2.53e3
  • 2.98e3
  • 3.42e3
  • 4.28e3
  • 4.44e3
95.08
  • 95.08
  • 91.53
  • 90.04
  • 88.56
  • 85.67
  • 85.12
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000468multi-cellular organism
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000014Blastula:Sphere
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000037Larval:Day 5
3.98e3
  • 3.98e3
  • 4.30e3
  • 4.85e3
  • 4.90e3
  • 6.97e3
  • 7.03e3
  • 7.50e3
  • 7.91e3
  • 8.96e3
  • 9.41e3
  • 1.79e4
  • 1.81e4
  • 1.83e4
86.66
  • 86.66
  • 85.61
  • 83.76
  • 83.61
  • 76.66
  • 76.46
  • 74.89
  • 73.52
  • 69.99
  • 68.50
  • 40.18
  • 39.42
  • 38.62
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003062primitive knot
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000018Gastrula:Germ-ring
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
4.07e3
  • 4.07e3
  • 9.96e3
  • 9.96e3
  • 9.96e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
86.36
  • 86.36
  • 66.67
  • 66.67
  • 66.67
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000019Gastrula:Shield
  • ZFS:0000023Segmentation:1-4 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000022Gastrula:Bud
  • UBERON:0004707pharyngula stage
  • ZFS:0000015Blastula:Dome
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000014Blastula:Sphere
4.39e3
  • 4.39e3
  • 5.98e3
  • 5.98e3
  • 5.98e3
  • 6.15e3
  • 6.22e3
  • 6.40e3
  • 7.47e3
  • 7.47e3
  • 7.47e3
  • 8.53e3
  • 8.96e3
  • 8.96e3
  • 9.13e3
  • 9.13e3
  • 9.13e3
  • 9.96e3
85.29
  • 85.29
  • 79.99
  • 79.99
  • 79.99
  • 79.40
  • 79.16
  • 78.56
  • 75.00
  • 75.00
  • 74.99
  • 71.43
  • 69.99
  • 69.99
  • 69.43
  • 69.43
  • 69.43
  • 66.66
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003077paraxial mesoderm
  • ZFS:0000025Segmentation:10-13 somites
6.37e3
  • 6.37e3
78.68
  • 78.68
AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • UBERON:0004707pharyngula stage
  • ZFS:0000037Larval:Day 5
6.91e3
  • 6.91e3
  • 1.03e4
  • 1.19e4
  • 1.19e4
  • 1.32e4
  • 1.39e4
  • 2.32e4
76.87
  • 76.87
  • 65.41
  • 60.31
  • 60.03
  • 55.67
  • 53.46
  • 22.30
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0009620tail bud paraxial mesoderm
  • ZFS:0000027Segmentation:20-25 somites
7.30e3
  • 7.30e3
75.57
  • 75.57
AEIR
  • AEIR
UBERON:2007024anterior neural keel
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
75.00
  • 75.00
AEIR
  • AEIR
UBERON:0015238pineal complex
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000033Hatching:Long-pec
7.47e3
  • 7.47e3
  • 1.49e4
  • 1.49e4
  • 1.49e4
75.00
  • 75.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003068axial mesoderm
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
  • ZFS:0000023Segmentation:1-4 somites
7.47e3
  • 7.47e3
  • 8.53e3
  • 1.24e4
  • 1.24e4
  • 1.28e4
75.00
  • 75.00
  • 71.43
  • 58.33
  • 58.33
  • 57.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004880chordamesoderm
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000021Gastrula:90%-epiboly
8.04e3
  • 8.04e3
  • 1.26e4
73.07
  • 73.07
  • 57.68
AEIR
  • AEIR
  • AEIR
UBERON:2001378axial hypoblast
  • ZFS:0000020Gastrula:75%-epiboly
  • ZFS:0000022Gastrula:Bud
8.96e3
  • 8.96e3
  • 1.49e4
70.00
  • 70.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0001905pineal body
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000035Larval:Protruding-mouth
9.60e3
  • 9.60e3
  • 1.07e4
  • 1.10e4
  • 1.39e4
  • 1.40e4
  • 1.41e4
  • 1.49e4
67.85
  • 67.85
  • 64.26
  • 63.14
  • 53.31
  • 53.10
  • 52.75
  • 49.99
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0007283presumptive shield
  • ZFS:0000017Gastrula:50%-epiboly
  • ZFS:0000016Blastula:30%-epiboly
9.96e3
  • 9.96e3
  • 1.12e4
66.67
  • 66.67
  • 62.50
AEIR
  • AEIR
  • AEIR
UBERON:0002328notochord
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000025Segmentation:10-13 somites
9.96e3
  • 9.96e3
  • 1.32e4
  • 1.34e4
  • 1.36e4
  • 1.36e4
66.66
  • 66.66
  • 55.86
  • 54.97
  • 54.52
  • 54.52
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0006222future diencephalon
  • ZFS:0000024Segmentation:5-9 somites
  • ZFS:0000023Segmentation:1-4 somites
1.03e4
  • 1.03e4
  • 1.37e4
65.37
  • 65.37
  • 54.15
AEIR
  • AEIR
  • AEIR
UBERON:0003059presomitic mesoderm
  • ZFS:0000025Segmentation:10-13 somites
1.06e4
  • 1.06e4
64.39
  • 64.39
AEIR
  • AEIR
UBERON:0003063prechordal plate
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.07e4
  • 1.07e4
  • 1.28e4
64.28
  • 64.28
  • 57.14
AEIR
  • AEIR
  • AEIR
UBERON:0003982mature ovarian follicle
  • UBERON:0000066fully formed stage
1.13e4
  • 1.13e4
62.13
  • 62.13
AEIR
  • AEIR
UBERON:0007097chordo neural hinge
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.24e4
  • 1.24e4
  • 1.24e4
58.33
  • 58.33
  • 58.33
AEIR
  • AEIR
  • AEIR
UBERON:0001893telencephalon
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
1.31e4
  • 1.31e4
  • 1.34e4
56.22
  • 56.22
  • 55.24
AEIR
  • AEIR
  • AEIR
ZFA:0000092axis (Danio)
  • ZFS:0000020Gastrula:75%-epiboly
1.33e4
  • 1.33e4
55.53
  • 55.53
AEIR
  • AEIR
UBERON:0002533post-anal tail bud
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000024Segmentation:5-9 somites
1.34e4
  • 1.34e4
  • 1.41e4
55.24
  • 55.24
  • 52.75
AEIR
  • AEIR
  • AEIR
UBERON:0019248early embryo
  • UBERON:0000107cleavage stage
1.35e4
  • 1.35e4
54.84
  • 54.84
AEIR
  • AEIR
UBERON:0003075neural plate
  • ZFS:0000021Gastrula:90%-epiboly
  • ZFS:0000022Gastrula:Bud
  • ZFS:0000024Segmentation:5-9 somites
1.38e4
  • 1.38e4
  • 1.39e4
  • 1.42e4
53.83
  • 53.83
  • 53.31
  • 52.60
AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0004879marginal zone of embryo
  • ZFS:0000016Blastula:30%-epiboly
1.38e4
  • 1.38e4
53.83
  • 53.83
AEIR
  • AEIR
CL:0000652pinealocyte
  • UBERON:0004707pharyngula stage
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000033Hatching:Long-pec
  • ZFS:0000034Hatching:Pec-fin
  • ZFS:0000035Larval:Protruding-mouth
1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0003057chordal neural plate
  • ZFS:0000024Segmentation:5-9 somites
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:2007026forebrain neural keel
  • ZFS:0000022Gastrula:Bud
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
UBERON:0006603presumptive mesoderm
  • ZFS:0000019Gastrula:Shield
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0000924ectoderm
  • ZFS:0000025Segmentation:10-13 somites
1.49e4
  • 1.49e4
49.99
  • 49.99
AEIR
  • AEIR
UBERON:0014371future telencephalon
  • ZFS:0000023Segmentation:1-4 somites
1.49e4
  • 1.49e4
49.98
  • 49.98
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
1.75e4
  • 1.75e4
  • 2.47e4
41.56
  • 41.56
  • 17.42
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • ZFS:0000031Pharyngula:Prim-25
  • UBERON:0000066fully formed stage
1.79e4
  • 1.79e4
  • 2.39e4
40.20
  • 40.20
  • 19.89
AEIR
  • AEIR
  • AEIR
UBERON:0002548larva
  • UBERON:0000069larval stage
1.91e4
  • 1.91e4
35.89
  • 35.89
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • Affymetrix data: Bgee
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:

Cross-references

EMBLBX571943
EnsemblENSDARG00000021201 (noto)
Uniprot/SPTREMBLB8A5N9, B8A5N9_DANRE
ZFINZDB-GENE-990415-75 (noto)

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