D. rerio Gene: zgc:165604 - ENSDARG00000021241 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021241
Namezgc:165604
Descriptionzgc:165604 [Source:ZFIN;Acc:ZDB-GENE-070615-34]
OrganismDanio rerio (zebrafish)

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
UBERON:0000468multi-cellular organism
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000032Pharyngula:High-pec
  • ZFS:0000031Pharyngula:Prim-25
  • ZFS:0000027Segmentation:20-25 somites
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0000104life cycle
1.76e3
  • 1.76e3
  • 2.92e3
  • 5.69e3
  • 7.47e3
  • 7.47e3
  • 7.97e3
  • 8.15e3
  • 8.54e3
  • 1.50e4
94.12
  • 94.12
  • 90.24
  • 80.95
  • 74.99
  • 74.99
  • 73.32
  • 72.72
  • 71.42
  • 49.92
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000966retina
  • ZFS:0000037Larval:Day 5
4.16e3
  • 4.16e3
86.08
  • 86.08
AEIR
  • AEIR
UBERON:0000970eye
  • ZFS:0000031Pharyngula:Prim-25
7.82e3
  • 7.82e3
73.80
  • 73.80
AEIR
  • AEIR
UBERON:0000033head
  • ZFS:0000037Larval:Day 5
  • UBERON:0000066fully formed stage
8.12e3
  • 8.12e3
  • 1.51e4
72.83
  • 72.83
  • 49.41
AEIR
  • AEIR
  • AEIR
UBERON:0000922embryo
  • ZFS:0000037Larval:Day 5
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000033Hatching:Long-pec
  • UBERON:0004707pharyngula stage
  • UBERON:0000068embryo stage
1.32e4
  • 1.32e4
  • 1.73e4
  • 1.74e4
  • 1.97e4
  • 2.00e4
55.85
  • 55.85
  • 42.01
  • 41.66
  • 33.92
  • 33.14
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000019camera-type eye
  • ZFS:0000035Larval:Protruding-mouth
1.34e4
  • 1.34e4
55.16
  • 55.16
AEIR
  • AEIR
UBERON:0002548larva
  • ZFS:0000037Larval:Day 5
  • UBERON:0000069larval stage
1.54e4
  • 1.54e4
  • 1.97e4
48.33
  • 48.33
  • 34.11
AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
1.82e4
  • 1.82e4
39.00
  • 39.00
AEIR
  • AEIR
UBERON:0000206pharyngeal gill
  • UBERON:0000066fully formed stage
1.98e4
  • 1.98e4
33.65
  • 33.65
AEIR
  • AEIR
UBERON:0000948heart
  • UBERON:0000066fully formed stage
2.06e4
  • 2.06e4
31.07
  • 31.07
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • EST data: Bgee
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • EST data: UniGene
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000021241 (zgc:165604)
ZFINZDB-GENE-070615-34 (zgc:165604)
EMBLCR405687
Uniprot/SPTREMBLF1QDQ3, F1QDQ3_DANRE

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