D. rerio Gene: pax4 - ENSDARG00000021336 - Danio rerio (zebrafish)

General information

Ensembl IDENSDARG00000021336
Namepax4
Descriptionpaired box 4 [Source:ZFIN;Acc:ZDB-GENE-041210-244]
OrganismDanio rerio (zebrafish)
Synonym(s)dkey-146j3.4, si:dkey-146j3.3

Expression

Anat. entity IDAnatomical entityDevelopmental stage(s)Rank scoreExpression scoreSources
CL:0000502type D enteroendocrine cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
7.47e3
  • 7.47e3
  • 9.96e3
75.00
  • 75.00
  • 66.67
AEIR
  • AEIR
  • AEIR
UBERON:0003923dorsal pancreatic bud
  • ZFS:0000030Pharyngula:Prim-15
  • ZFS:0000029Pharyngula:Prim-5
7.47e3
  • 7.47e3
  • 9.33e3
75.00
  • 75.00
  • 68.74
AEIR
  • AEIR
  • AEIR
UBERON:0000465material anatomical entity
  • ZFS:0000024Segmentation:5-9 somites
9.71e3
  • 9.71e3
67.48
  • 67.48
AEIR
  • AEIR
UBERON:0003921pancreas primordium
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000028Segmentation:26+ somites
  • ZFS:0000026Segmentation:14-19 somites
  • ZFS:0000027Segmentation:20-25 somites
1.15e4
  • 1.15e4
  • 1.24e4
  • 1.33e4
  • 1.49e4
61.53
  • 61.53
  • 58.32
  • 55.55
  • 49.98
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
CL:0000171pancreatic A cell
  • ZFS:0000029Pharyngula:Prim-5
1.49e4
  • 1.49e4
50.00
  • 50.00
AEIR
  • AEIR
CL:0005019pancreatic epsilon cell
  • ZFS:0000029Pharyngula:Prim-5
  • ZFS:0000030Pharyngula:Prim-15
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000930stomodeum
  • ZFS:0000035Larval:Protruding-mouth
  • ZFS:0000036Larval:Day 4
1.49e4
  • 1.49e4
  • 1.49e4
50.00
  • 50.00
  • 50.00
AEIR
  • AEIR
  • AEIR
UBERON:0000160intestine
  • UBERON:0000066fully formed stage
1.66e4
  • 1.66e4
44.57
  • 44.57
AEIR
  • AEIR
UBERON:0004734gastrula
  • ZFS:0000022Gastrula:Bud
1.67e4
  • 1.67e4
44.18
  • 44.18
AEIR
  • AEIR
UBERON:0000922embryo
  • UBERON:0004707pharyngula stage
  • ZFS:0000029Pharyngula:Prim-5
  • UBERON:0000068embryo stage
  • ZFS:0000037Larval:Day 5
2.04e4
  • 2.04e4
  • 2.10e4
  • 2.16e4
  • 2.30e4
31.85
  • 31.85
  • 29.80
  • 27.56
  • 22.83
AEIR
  • AEIR
  • AEIR
  • AEIR
  • AEIR
UBERON:0000955brain
  • UBERON:0000066fully formed stage
2.14e4
  • 2.14e4
28.24
  • 28.24
AEIR
  • AEIR
UBERON:0002107liver
  • UBERON:0000066fully formed stage
2.48e4
  • 2.48e4
16.80
  • 16.80
AEIR
  • AEIR
Sources
AAffymetrix
EEST
IIn Situ
RRNA-Seq
data
no data
Rank scores
3.25e4lightgrey: low confidence scores

important score variation

Rank scores of expression calls are normalized across genes, conditions and species. Low score means that the gene is highly expressed in the condition. Max rank score in all species: 4.10e4. Min rank score varies across species.

Expression scores of expression calls use the minimum and maximum Rank of the species to normalize the expression to a value between 0 and 100. Low score means that the gene is lowly expressed in the condition.

Sources of annotations to anatomy and development:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: Bgee
Sources of raw data:
  • In situ hybridization data: ZFIN
  • RNA-Seq data: GEO

Cross-references

EnsemblENSDARG00000021336 (pax4)
ZFINZDB-GENE-041210-244 (pax4)
EMBLBX897731
Uniprot/SPTREMBLF1R840, F1R840_DANRE

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